Hb_000300_450

Information

Type -
Description -
Location Contig300: 392967-399156
Sequence    

Annotation

kegg
ID cit:102619425
description caffeic acid 3-O-methyltransferase-like
nr
ID XP_006464487.1
description PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]
swissprot
ID Q43609
description Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1
trembl
ID F6H775
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00850 PE=4 SV=1
Gene Ontology
ID GO:0008171
description caffeic acid 3-o-methyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31599: 397124-397260
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000300_450 0.0 - - PREDICTED: caffeic acid 3-O-methyltransferase-like isoform X1 [Citrus sinensis]
2 Hb_000347_550 0.0903909506 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
3 Hb_004195_240 0.1276599996 - - Peroxidase 72 precursor, putative [Ricinus communis]
4 Hb_006620_040 0.1280752 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
5 Hb_000683_010 0.1499801259 - - Interleukin-1 receptor-associated kinase, putative [Ricinus communis]
6 Hb_000466_090 0.1501962795 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
7 Hb_000135_050 0.1517266015 - - PREDICTED: putative leucine-rich repeat receptor-like protein kinase At2g19210-like isoform X2 [Citrus sinensis]
8 Hb_000907_190 0.1523397826 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
9 Hb_008768_010 0.1524330201 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
10 Hb_003968_020 0.1550785785 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
11 Hb_020332_040 0.1560483407 - - PREDICTED: alcohol dehydrogenase 1-like [Jatropha curcas]
12 Hb_011486_030 0.1630162049 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
13 Hb_000189_260 0.1650717778 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000076_200 0.1650860287 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004222_010 0.1672495598 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
16 Hb_001250_140 0.1672975781 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
17 Hb_012660_010 0.1678708717 - - hypothetical protein JCGZ_25971 [Jatropha curcas]
18 Hb_003057_080 0.1687829373 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 1-like [Jatropha curcas]
19 Hb_027141_010 0.1693968129 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_000648_120 0.1699513734 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Vitis vinifera]

Gene co-expression network

sample Hb_000300_450 Hb_000300_450 Hb_000347_550 Hb_000347_550 Hb_000300_450--Hb_000347_550 Hb_004195_240 Hb_004195_240 Hb_000300_450--Hb_004195_240 Hb_006620_040 Hb_006620_040 Hb_000300_450--Hb_006620_040 Hb_000683_010 Hb_000683_010 Hb_000300_450--Hb_000683_010 Hb_000466_090 Hb_000466_090 Hb_000300_450--Hb_000466_090 Hb_000135_050 Hb_000135_050 Hb_000300_450--Hb_000135_050 Hb_000347_550--Hb_004195_240 Hb_148435_010 Hb_148435_010 Hb_000347_550--Hb_148435_010 Hb_003057_080 Hb_003057_080 Hb_000347_550--Hb_003057_080 Hb_148914_010 Hb_148914_010 Hb_000347_550--Hb_148914_010 Hb_010407_120 Hb_010407_120 Hb_000347_550--Hb_010407_120 Hb_173448_010 Hb_173448_010 Hb_004195_240--Hb_173448_010 Hb_004195_240--Hb_148435_010 Hb_004774_060 Hb_004774_060 Hb_004195_240--Hb_004774_060 Hb_061195_010 Hb_061195_010 Hb_004195_240--Hb_061195_010 Hb_004195_240--Hb_148914_010 Hb_003968_020 Hb_003968_020 Hb_006620_040--Hb_003968_020 Hb_039562_010 Hb_039562_010 Hb_006620_040--Hb_039562_010 Hb_006620_040--Hb_000466_090 Hb_023080_010 Hb_023080_010 Hb_006620_040--Hb_023080_010 Hb_003189_030 Hb_003189_030 Hb_006620_040--Hb_003189_030 Hb_000907_190 Hb_000907_190 Hb_006620_040--Hb_000907_190 Hb_000422_020 Hb_000422_020 Hb_000683_010--Hb_000422_020 Hb_008768_010 Hb_008768_010 Hb_000683_010--Hb_008768_010 Hb_011282_070 Hb_011282_070 Hb_000683_010--Hb_011282_070 Hb_020332_040 Hb_020332_040 Hb_000683_010--Hb_020332_040 Hb_027141_010 Hb_027141_010 Hb_000683_010--Hb_027141_010 Hb_003900_050 Hb_003900_050 Hb_000683_010--Hb_003900_050 Hb_000466_090--Hb_003189_030 Hb_002173_080 Hb_002173_080 Hb_000466_090--Hb_002173_080 Hb_000659_010 Hb_000659_010 Hb_000466_090--Hb_000659_010 Hb_000487_150 Hb_000487_150 Hb_000466_090--Hb_000487_150 Hb_001003_020 Hb_001003_020 Hb_000466_090--Hb_001003_020 Hb_000281_200 Hb_000281_200 Hb_000135_050--Hb_000281_200 Hb_000648_120 Hb_000648_120 Hb_000135_050--Hb_000648_120 Hb_000189_260 Hb_000189_260 Hb_000135_050--Hb_000189_260 Hb_159769_010 Hb_159769_010 Hb_000135_050--Hb_159769_010 Hb_011486_030 Hb_011486_030 Hb_000135_050--Hb_011486_030 Hb_000135_050--Hb_020332_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0317845 0.00885036 0.0351771 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0202245 0 0.507516 0.0425846

CAGE analysis