Hb_000487_150

Information

Type -
Description -
Location Contig487: 160229-167922
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10070g
description POPTRDRAFT_558746; oxidoreductase family protein
nr
ID XP_012087396.1
description PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
swissprot
ID Q9C899
description Feruloyl CoA ortho-hydroxylase 2 OS=Arabidopsis thaliana GN=F6'H2 PE=1 SV=1
trembl
ID A0A067JYM9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22640 PE=3 SV=1
Gene Ontology
ID GO:0005506
description 2-oxoglutarate and fe -dependent oxygenase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45002: 165638-167905
cDNA
(Sanger)
(ID:Location)		 010_O11.ab1: 165648-166908

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000487_150 0.0 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
2 Hb_000318_440 0.082622563 - - PREDICTED: allene oxide synthase 2-like [Jatropha curcas]
3 Hb_012532_020 0.0886582904 - - Isoflavone reductase, putative [Ricinus communis]
4 Hb_000127_250 0.0914614595 - - Alliin lyase precursor, putative [Ricinus communis]
5 Hb_002173_080 0.0954475522 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_000059_100 0.0971157313 - - Basic blue protein, putative [Ricinus communis]
7 Hb_039562_010 0.1029658889 - - PREDICTED: protein SRG1-like [Jatropha curcas]
8 Hb_003237_040 0.1041566888 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
9 Hb_007532_050 0.1081132325 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
10 Hb_000466_090 0.110638021 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2-like isoform X1 [Jatropha curcas]
11 Hb_004693_010 0.1147113715 - - hypothetical protein JCGZ_02321 [Jatropha curcas]
12 Hb_003090_070 0.1147602587 - - PREDICTED: laccase-7 [Jatropha curcas]
13 Hb_073171_020 0.1156446731 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
14 Hb_035583_010 0.1218489056 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
15 Hb_004055_180 0.1228945655 - - cell wall invertase [Manihot esculenta]
16 Hb_002805_230 0.1233326005 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
17 Hb_007417_020 0.1237229541 - - Reticuline oxidase precursor, putative [Ricinus communis]
18 Hb_097908_010 0.124387786 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 isoform X2 [Jatropha curcas]
19 Hb_003189_030 0.1268114708 - - hypothetical protein Csa_4G304750 [Cucumis sativus]
20 Hb_135392_010 0.1328941263 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000487_150 Hb_000487_150 Hb_000318_440 Hb_000318_440 Hb_000487_150--Hb_000318_440 Hb_012532_020 Hb_012532_020 Hb_000487_150--Hb_012532_020 Hb_000127_250 Hb_000127_250 Hb_000487_150--Hb_000127_250 Hb_002173_080 Hb_002173_080 Hb_000487_150--Hb_002173_080 Hb_000059_100 Hb_000059_100 Hb_000487_150--Hb_000059_100 Hb_039562_010 Hb_039562_010 Hb_000487_150--Hb_039562_010 Hb_000318_440--Hb_039562_010 Hb_004693_010 Hb_004693_010 Hb_000318_440--Hb_004693_010 Hb_000318_440--Hb_000059_100 Hb_007532_050 Hb_007532_050 Hb_000318_440--Hb_007532_050 Hb_002805_230 Hb_002805_230 Hb_000318_440--Hb_002805_230 Hb_003090_070 Hb_003090_070 Hb_000318_440--Hb_003090_070 Hb_012532_020--Hb_000127_250 Hb_012532_020--Hb_000059_100 Hb_007320_040 Hb_007320_040 Hb_012532_020--Hb_007320_040 Hb_185391_010 Hb_185391_010 Hb_012532_020--Hb_185391_010 Hb_177880_010 Hb_177880_010 Hb_012532_020--Hb_177880_010 Hb_003237_040 Hb_003237_040 Hb_000127_250--Hb_003237_040 Hb_000127_250--Hb_185391_010 Hb_000127_250--Hb_000059_100 Hb_058620_050 Hb_058620_050 Hb_000127_250--Hb_058620_050 Hb_015146_010 Hb_015146_010 Hb_000127_250--Hb_015146_010 Hb_002173_080--Hb_039562_010 Hb_003189_030 Hb_003189_030 Hb_002173_080--Hb_003189_030 Hb_002173_080--Hb_003237_040 Hb_002173_080--Hb_000318_440 Hb_004097_080 Hb_004097_080 Hb_002173_080--Hb_004097_080 Hb_000059_100--Hb_003090_070 Hb_005614_040 Hb_005614_040 Hb_000059_100--Hb_005614_040 Hb_000059_100--Hb_002805_230 Hb_000059_100--Hb_004693_010 Hb_000059_100--Hb_007532_050 Hb_003968_020 Hb_003968_020 Hb_039562_010--Hb_003968_020 Hb_039562_010--Hb_004693_010 Hb_135392_010 Hb_135392_010 Hb_039562_010--Hb_135392_010 Hb_039562_010--Hb_004097_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0593864 1.02742 1.39926 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0834678 27.6372 1.02267

CAGE analysis