Hb_000072_130

Information

Type -
Description -
Location Contig72: 264981-267835
Sequence    

Annotation

kegg
ID dosa:Os04t0410200-00
description Os04g0410200; Similar to H0321H01.14 protein.
nr
ID EAZ43947.1
description hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
swissprot
ID P40376
description cAMP-dependent protein kinase catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pka1 PE=1 SV=1
trembl
ID M1AGN1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008686 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase d6pkl2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55581: 262528-267752 , PASA_asmbl_55582: 264835-265228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000072_130 0.0 - - hypothetical protein OsJ_28567 [Oryza sativa Japonica Group]
2 Hb_000140_210 0.0802302041 - - sec10, putative [Ricinus communis]
3 Hb_000477_100 0.081572344 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
4 Hb_000208_280 0.0866921185 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
5 Hb_007638_030 0.0894925014 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
6 Hb_000192_080 0.0899251802 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]
7 Hb_007416_090 0.0908044471 - - UDP-sugar transporter, putative [Ricinus communis]
8 Hb_001500_100 0.0928955387 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000069_210 0.0930418395 - - PREDICTED: exportin-2 [Jatropha curcas]
10 Hb_011016_050 0.0930840782 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
11 Hb_012322_010 0.0952694884 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
12 Hb_000159_090 0.0963963921 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
13 Hb_001377_510 0.1012802321 - - ormdl, putative [Ricinus communis]
14 Hb_003544_050 0.1023684257 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
15 Hb_000140_280 0.1029591573 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
16 Hb_008970_030 0.1037896808 - - arf gtpase-activating protein, putative [Ricinus communis]
17 Hb_000072_120 0.10441863 - - serine/threonine protein kinase, putative [Ricinus communis]
18 Hb_103684_010 0.1045133806 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
19 Hb_006452_120 0.1051338026 - - PREDICTED: protein FAM188A [Jatropha curcas]
20 Hb_006002_040 0.1053600238 - - PREDICTED: uncharacterized protein LOC105638085 [Jatropha curcas]

Gene co-expression network

sample Hb_000072_130 Hb_000072_130 Hb_000140_210 Hb_000140_210 Hb_000072_130--Hb_000140_210 Hb_000477_100 Hb_000477_100 Hb_000072_130--Hb_000477_100 Hb_000208_280 Hb_000208_280 Hb_000072_130--Hb_000208_280 Hb_007638_030 Hb_007638_030 Hb_000072_130--Hb_007638_030 Hb_000192_080 Hb_000192_080 Hb_000072_130--Hb_000192_080 Hb_007416_090 Hb_007416_090 Hb_000072_130--Hb_007416_090 Hb_003544_050 Hb_003544_050 Hb_000140_210--Hb_003544_050 Hb_009296_040 Hb_009296_040 Hb_000140_210--Hb_009296_040 Hb_011016_050 Hb_011016_050 Hb_000140_210--Hb_011016_050 Hb_000066_170 Hb_000066_170 Hb_000140_210--Hb_000066_170 Hb_085781_020 Hb_085781_020 Hb_000140_210--Hb_085781_020 Hb_000028_390 Hb_000028_390 Hb_000140_210--Hb_000028_390 Hb_007481_010 Hb_007481_010 Hb_000477_100--Hb_007481_010 Hb_000046_500 Hb_000046_500 Hb_000477_100--Hb_000046_500 Hb_000352_300 Hb_000352_300 Hb_000477_100--Hb_000352_300 Hb_000146_040 Hb_000146_040 Hb_000477_100--Hb_000146_040 Hb_003097_140 Hb_003097_140 Hb_000477_100--Hb_003097_140 Hb_001051_070 Hb_001051_070 Hb_000477_100--Hb_001051_070 Hb_000487_270 Hb_000487_270 Hb_000208_280--Hb_000487_270 Hb_000208_280--Hb_000192_080 Hb_012114_100 Hb_012114_100 Hb_000208_280--Hb_012114_100 Hb_000140_350 Hb_000140_350 Hb_000208_280--Hb_000140_350 Hb_001679_050 Hb_001679_050 Hb_000208_280--Hb_001679_050 Hb_000836_280 Hb_000836_280 Hb_000208_280--Hb_000836_280 Hb_000159_090 Hb_000159_090 Hb_007638_030--Hb_000159_090 Hb_010964_040 Hb_010964_040 Hb_007638_030--Hb_010964_040 Hb_000140_280 Hb_000140_280 Hb_007638_030--Hb_000140_280 Hb_000429_150 Hb_000429_150 Hb_007638_030--Hb_000429_150 Hb_004567_090 Hb_004567_090 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_000192_080--Hb_007638_030 Hb_000009_560 Hb_000009_560 Hb_000192_080--Hb_000009_560 Hb_012322_010 Hb_012322_010 Hb_000192_080--Hb_012322_010 Hb_000665_060 Hb_000665_060 Hb_000192_080--Hb_000665_060 Hb_000192_080--Hb_004567_090 Hb_000069_210 Hb_000069_210 Hb_007416_090--Hb_000069_210 Hb_001898_080 Hb_001898_080 Hb_007416_090--Hb_001898_080 Hb_000116_270 Hb_000116_270 Hb_007416_090--Hb_000116_270 Hb_001789_150 Hb_001789_150 Hb_007416_090--Hb_001789_150 Hb_149985_010 Hb_149985_010 Hb_007416_090--Hb_149985_010 Hb_000095_080 Hb_000095_080 Hb_007416_090--Hb_000095_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.17059 14.4823 8.50009 30.4791 10.372 18.619
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8831 10.4856 21.057 21.7313 12.8315

CAGE analysis