Hb_000009_110

Information

Type -
Description -
Location Contig9: 120063-123300
Sequence    

Annotation

kegg
ID rcu:RCOM_0553220
description Minor allergen Alt a, putative
nr
ID XP_002525103.1
description Minor allergen Alt a, putative [Ricinus communis]
swissprot
ID O23207
description Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 OS=Arabidopsis thaliana GN=At4g36750 PE=1 SV=1
trembl
ID B9SGI4
description Minor allergen Alt a, putative OS=Ricinus communis GN=RCOM_0553220 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable nad h dehydrogenase fqr1-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61834: 121887-122017 , PASA_asmbl_61835: 120164-123266
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_110 0.0 - - Minor allergen Alt a, putative [Ricinus communis]
2 Hb_008246_060 0.1310164849 - - hypothetical protein F383_01577 [Gossypium arboreum]
3 Hb_003052_050 0.1435977088 - - PREDICTED: LAG1 longevity assurance homolog 3 [Jatropha curcas]
4 Hb_000749_270 0.1494230153 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
5 Hb_024128_020 0.1564536595 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
6 Hb_008790_030 0.1576461592 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
7 Hb_001390_130 0.1588816559 - - hypothetical protein POPTR_0009s08590g [Populus trichocarpa]
8 Hb_004129_140 0.1598128406 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g06470 [Jatropha curcas]
9 Hb_001897_040 0.1598437898 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
10 Hb_004126_070 0.1616621856 desease resistance Gene Name: CDC48_2 PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
11 Hb_003032_010 0.1635136854 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
12 Hb_010931_130 0.1638676548 - - PREDICTED: mitogen-activated protein kinase 20 [Jatropha curcas]
13 Hb_012627_030 0.165258852 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
14 Hb_002304_040 0.1660344977 - - PREDICTED: uncharacterized protein LOC105649623 isoform X2 [Jatropha curcas]
15 Hb_005305_110 0.1660597209 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
16 Hb_001482_040 0.1685379434 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004696_080 0.1686565391 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
18 Hb_119316_010 0.1697929598 - - tryptophan biosynthesis protein, putative [Ricinus communis]
19 Hb_007425_010 0.1698711751 - - uncharacterized protein LOC100499741 [Glycine max]
20 Hb_003992_170 0.1706250717 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]

Gene co-expression network

sample Hb_000009_110 Hb_000009_110 Hb_008246_060 Hb_008246_060 Hb_000009_110--Hb_008246_060 Hb_003052_050 Hb_003052_050 Hb_000009_110--Hb_003052_050 Hb_000749_270 Hb_000749_270 Hb_000009_110--Hb_000749_270 Hb_024128_020 Hb_024128_020 Hb_000009_110--Hb_024128_020 Hb_008790_030 Hb_008790_030 Hb_000009_110--Hb_008790_030 Hb_001390_130 Hb_001390_130 Hb_000009_110--Hb_001390_130 Hb_004627_040 Hb_004627_040 Hb_008246_060--Hb_004627_040 Hb_006618_120 Hb_006618_120 Hb_008246_060--Hb_006618_120 Hb_003057_060 Hb_003057_060 Hb_008246_060--Hb_003057_060 Hb_024439_010 Hb_024439_010 Hb_008246_060--Hb_024439_010 Hb_013575_010 Hb_013575_010 Hb_008246_060--Hb_013575_010 Hb_001511_060 Hb_001511_060 Hb_008246_060--Hb_001511_060 Hb_010931_130 Hb_010931_130 Hb_003052_050--Hb_010931_130 Hb_001514_120 Hb_001514_120 Hb_003052_050--Hb_001514_120 Hb_005167_010 Hb_005167_010 Hb_003052_050--Hb_005167_010 Hb_012799_170 Hb_012799_170 Hb_003052_050--Hb_012799_170 Hb_001541_120 Hb_001541_120 Hb_003052_050--Hb_001541_120 Hb_007975_060 Hb_007975_060 Hb_003052_050--Hb_007975_060 Hb_004078_040 Hb_004078_040 Hb_000749_270--Hb_004078_040 Hb_001799_210 Hb_001799_210 Hb_000749_270--Hb_001799_210 Hb_000925_130 Hb_000925_130 Hb_000749_270--Hb_000925_130 Hb_000465_160 Hb_000465_160 Hb_000749_270--Hb_000465_160 Hb_009339_030 Hb_009339_030 Hb_000749_270--Hb_009339_030 Hb_000393_020 Hb_000393_020 Hb_000749_270--Hb_000393_020 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_005144_050 Hb_005144_050 Hb_024128_020--Hb_005144_050 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_001366_180 Hb_001366_180 Hb_024128_020--Hb_001366_180 Hb_006478_020 Hb_006478_020 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050 Hb_000415_040 Hb_000415_040 Hb_008790_030--Hb_000415_040 Hb_004191_020 Hb_004191_020 Hb_008790_030--Hb_004191_020 Hb_000331_200 Hb_000331_200 Hb_008790_030--Hb_000331_200 Hb_019762_020 Hb_019762_020 Hb_008790_030--Hb_019762_020 Hb_000173_290 Hb_000173_290 Hb_008790_030--Hb_000173_290 Hb_008790_030--Hb_024128_020 Hb_000291_080 Hb_000291_080 Hb_001390_130--Hb_000291_080 Hb_002111_040 Hb_002111_040 Hb_001390_130--Hb_002111_040 Hb_003697_040 Hb_003697_040 Hb_001390_130--Hb_003697_040 Hb_005488_200 Hb_005488_200 Hb_001390_130--Hb_005488_200 Hb_007416_060 Hb_007416_060 Hb_001390_130--Hb_007416_060 Hb_000538_070 Hb_000538_070 Hb_001390_130--Hb_000538_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.40702 1.97547 8.16183 18.7182 16.5237 4.69947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.8141 16.4693 21.7952 5.77606 12.5566

CAGE analysis