Hb_181398_010

Information

Type -
Description -
Location Contig181398: 38-616
Sequence    

Annotation

kegg
ID cmo:103498182
description uncharacterized LOC103498182
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID W9QKF9
description Uncharacterized protein OS=Morus notabilis GN=L484_019698 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_181398_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_001124_220 0.2526180589 - - DsRNA-binding protein 5, putative isoform 1 [Theobroma cacao]
3 Hb_000106_140 0.271534328 - - -
4 Hb_000032_070 0.2774536806 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
5 Hb_048116_010 0.2799168999 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
6 Hb_162547_010 0.283758133 - - -
7 Hb_001114_130 0.2853681939 transcription factor TF Family: MIKC PREDICTED: MADS-box protein SVP-like isoform X1 [Jatropha curcas]
8 Hb_001318_190 0.289242411 - - PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis]
9 Hb_007680_010 0.2898695811 - - hypothetical protein JCGZ_09539 [Jatropha curcas]
10 Hb_001430_070 0.2902941413 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001344_010 0.2910081099 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
12 Hb_003680_190 0.2919869296 - - hypothetical protein POPTR_0006s11880g [Populus trichocarpa]
13 Hb_001476_140 0.2935789056 - - PREDICTED: uncharacterized protein LOC105630497 [Jatropha curcas]
14 Hb_030827_070 0.2950897572 - - PREDICTED: transmembrane protein 161B [Jatropha curcas]
15 Hb_001024_020 0.2973459809 - - hypothetical protein JCGZ_08989 [Jatropha curcas]
16 Hb_002110_040 0.2980273088 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
17 Hb_004935_060 0.298308831 - - Uncharacterized protein isoform 2 [Theobroma cacao]
18 Hb_000365_020 0.2988495213 - - Vacuolar sorting receptor 1 precursor, putative [Ricinus communis]
19 Hb_000009_240 0.2999377871 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
20 Hb_006162_010 0.3014148571 - - CAZy families GH95 protein, partial [uncultured Chitinophaga sp.]

Gene co-expression network

sample Hb_181398_010 Hb_181398_010 Hb_001124_220 Hb_001124_220 Hb_181398_010--Hb_001124_220 Hb_000106_140 Hb_000106_140 Hb_181398_010--Hb_000106_140 Hb_000032_070 Hb_000032_070 Hb_181398_010--Hb_000032_070 Hb_048116_010 Hb_048116_010 Hb_181398_010--Hb_048116_010 Hb_162547_010 Hb_162547_010 Hb_181398_010--Hb_162547_010 Hb_001114_130 Hb_001114_130 Hb_181398_010--Hb_001114_130 Hb_001124_220--Hb_162547_010 Hb_003680_190 Hb_003680_190 Hb_001124_220--Hb_003680_190 Hb_002194_090 Hb_002194_090 Hb_001124_220--Hb_002194_090 Hb_000792_090 Hb_000792_090 Hb_001124_220--Hb_000792_090 Hb_000384_110 Hb_000384_110 Hb_001124_220--Hb_000384_110 Hb_126757_010 Hb_126757_010 Hb_001124_220--Hb_126757_010 Hb_002983_050 Hb_002983_050 Hb_000106_140--Hb_002983_050 Hb_000009_240 Hb_000009_240 Hb_000106_140--Hb_000009_240 Hb_001969_080 Hb_001969_080 Hb_000106_140--Hb_001969_080 Hb_001377_510 Hb_001377_510 Hb_000106_140--Hb_001377_510 Hb_002391_270 Hb_002391_270 Hb_000106_140--Hb_002391_270 Hb_005914_080 Hb_005914_080 Hb_000106_140--Hb_005914_080 Hb_009529_040 Hb_009529_040 Hb_000032_070--Hb_009529_040 Hb_002603_050 Hb_002603_050 Hb_000032_070--Hb_002603_050 Hb_001018_110 Hb_001018_110 Hb_000032_070--Hb_001018_110 Hb_002150_040 Hb_002150_040 Hb_000032_070--Hb_002150_040 Hb_003141_070 Hb_003141_070 Hb_000032_070--Hb_003141_070 Hb_002631_070 Hb_002631_070 Hb_000032_070--Hb_002631_070 Hb_001476_140 Hb_001476_140 Hb_048116_010--Hb_001476_140 Hb_003988_010 Hb_003988_010 Hb_048116_010--Hb_003988_010 Hb_000031_150 Hb_000031_150 Hb_048116_010--Hb_000031_150 Hb_004137_060 Hb_004137_060 Hb_048116_010--Hb_004137_060 Hb_010417_050 Hb_010417_050 Hb_048116_010--Hb_010417_050 Hb_189118_010 Hb_189118_010 Hb_048116_010--Hb_189118_010 Hb_004117_120 Hb_004117_120 Hb_162547_010--Hb_004117_120 Hb_162547_010--Hb_126757_010 Hb_003925_020 Hb_003925_020 Hb_162547_010--Hb_003925_020 Hb_009646_040 Hb_009646_040 Hb_162547_010--Hb_009646_040 Hb_002272_280 Hb_002272_280 Hb_162547_010--Hb_002272_280 Hb_000898_050 Hb_000898_050 Hb_001114_130--Hb_000898_050 Hb_000692_220 Hb_000692_220 Hb_001114_130--Hb_000692_220 Hb_001205_150 Hb_001205_150 Hb_001114_130--Hb_001205_150 Hb_001235_030 Hb_001235_030 Hb_001114_130--Hb_001235_030 Hb_000107_310 Hb_000107_310 Hb_001114_130--Hb_000107_310 Hb_001461_010 Hb_001461_010 Hb_001114_130--Hb_001461_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.140429 0 0.634767 0.406492 0.35634
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.358968 0.0940172 0.645919 0.116543 0.178402

CAGE analysis