Hb_137338_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig137338: 120-962
Sequence    

Annotation

kegg
ID rcu:RCOM_0687360
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID GO:0032550
description leucine-rich repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137338_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_001379_080 0.1705520313 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
3 Hb_006501_140 0.2078908725 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
4 Hb_000805_220 0.2087110625 - - polyprotein [Citrus endogenous pararetrovirus]
5 Hb_100526_020 0.2115029296 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
6 Hb_001498_050 0.2283864494 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
7 Hb_001496_110 0.2367436691 - - hypothetical protein VITISV_044023 [Vitis vinifera]
8 Hb_000930_020 0.2391410204 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
9 Hb_000342_120 0.2521698828 - - PREDICTED: probable protein phosphatase 2C 72 [Jatropha curcas]
10 Hb_000974_030 0.2563880805 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
11 Hb_034953_010 0.2569757378 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
12 Hb_000096_050 0.2574025001 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002060_070 0.2583251196 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
14 Hb_009492_020 0.2601665319 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
15 Hb_000984_110 0.2627913208 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
16 Hb_003145_030 0.2636085521 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004730_010 0.2685159758 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
18 Hb_105814_020 0.2736303054 - - berberine bridge enzyme [Hevea brasiliensis]
19 Hb_000003_700 0.2748606384 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
20 Hb_001295_050 0.2755256839 - - PREDICTED: uncharacterized protein LOC101503108 isoform X1 [Cicer arietinum]

Gene co-expression network

sample Hb_137338_010 Hb_137338_010 Hb_001379_080 Hb_001379_080 Hb_137338_010--Hb_001379_080 Hb_006501_140 Hb_006501_140 Hb_137338_010--Hb_006501_140 Hb_000805_220 Hb_000805_220 Hb_137338_010--Hb_000805_220 Hb_100526_020 Hb_100526_020 Hb_137338_010--Hb_100526_020 Hb_001498_050 Hb_001498_050 Hb_137338_010--Hb_001498_050 Hb_001496_110 Hb_001496_110 Hb_137338_010--Hb_001496_110 Hb_002060_070 Hb_002060_070 Hb_001379_080--Hb_002060_070 Hb_082972_010 Hb_082972_010 Hb_001379_080--Hb_082972_010 Hb_001379_080--Hb_000805_220 Hb_002837_080 Hb_002837_080 Hb_001379_080--Hb_002837_080 Hb_000930_020 Hb_000930_020 Hb_001379_080--Hb_000930_020 Hb_001379_080--Hb_100526_020 Hb_006501_140--Hb_000805_220 Hb_006501_140--Hb_100526_020 Hb_006501_140--Hb_000930_020 Hb_105814_020 Hb_105814_020 Hb_006501_140--Hb_105814_020 Hb_003145_030 Hb_003145_030 Hb_006501_140--Hb_003145_030 Hb_000974_030 Hb_000974_030 Hb_006501_140--Hb_000974_030 Hb_009492_020 Hb_009492_020 Hb_000805_220--Hb_009492_020 Hb_000805_220--Hb_000930_020 Hb_000805_220--Hb_002060_070 Hb_000805_220--Hb_100526_020 Hb_000096_050 Hb_000096_050 Hb_000805_220--Hb_000096_050 Hb_100526_020--Hb_000096_050 Hb_100526_020--Hb_000974_030 Hb_100526_020--Hb_000930_020 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110 Hb_061783_010 Hb_061783_010 Hb_001498_050--Hb_061783_010 Hb_001498_050--Hb_000984_110 Hb_004102_200 Hb_004102_200 Hb_001498_050--Hb_004102_200 Hb_029238_040 Hb_029238_040 Hb_001498_050--Hb_029238_040 Hb_158189_010 Hb_158189_010 Hb_001498_050--Hb_158189_010 Hb_156850_050 Hb_156850_050 Hb_001498_050--Hb_156850_050 Hb_000342_120 Hb_000342_120 Hb_001496_110--Hb_000342_120 Hb_004730_010 Hb_004730_010 Hb_001496_110--Hb_004730_010 Hb_000041_160 Hb_000041_160 Hb_001496_110--Hb_000041_160 Hb_034953_010 Hb_034953_010 Hb_001496_110--Hb_034953_010 Hb_002004_010 Hb_002004_010 Hb_001496_110--Hb_002004_010 Hb_123078_010 Hb_123078_010 Hb_001496_110--Hb_123078_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.175111 0 0.129205 0 0.0349715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.10539

CAGE analysis