Hb_001498_050

Information

Type -
Description -
Location Contig1498: 41193-42522
Sequence    

Annotation

kegg
ID csv:101225033
description uncharacterized LOC101225033
nr
ID XP_012066591.1
description PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9QD67
description Uncharacterized protein OS=Morus notabilis GN=L484_012687 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001498_050 0.0 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
2 Hb_061783_010 0.1373951207 - - PREDICTED: uncharacterized protein LOC105124983 isoform X4 [Populus euphratica]
3 Hb_000984_110 0.1465178877 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
4 Hb_004102_200 0.1642184228 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
5 Hb_029238_040 0.1759437001 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
6 Hb_158189_010 0.176302952 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
7 Hb_156850_050 0.1772490102 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
8 Hb_000403_100 0.180179944 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
9 Hb_000983_130 0.1813509545 - - transcription factor, putative [Ricinus communis]
10 Hb_004450_090 0.1847711952 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
11 Hb_005048_090 0.1851194227 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
12 Hb_080601_010 0.1853122938 - - metallothionein 3-like protein [Hevea brasiliensis]
13 Hb_002035_130 0.1875471574 - - plasma membrane H+-ATPase [Hevea brasiliensis]
14 Hb_100526_020 0.1887604971 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
15 Hb_000003_700 0.191045337 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_017700_030 0.1943542619 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
17 Hb_152277_010 0.1956949347 - - PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like [Jatropha curcas]
18 Hb_002170_010 0.1972942608 - - hypothetical protein JCGZ_25046 [Jatropha curcas]
19 Hb_001080_120 0.1989974943 - - Spotted leaf protein, putative [Ricinus communis]
20 Hb_001680_050 0.1996749763 - - -

Gene co-expression network

sample Hb_001498_050 Hb_001498_050 Hb_061783_010 Hb_061783_010 Hb_001498_050--Hb_061783_010 Hb_000984_110 Hb_000984_110 Hb_001498_050--Hb_000984_110 Hb_004102_200 Hb_004102_200 Hb_001498_050--Hb_004102_200 Hb_029238_040 Hb_029238_040 Hb_001498_050--Hb_029238_040 Hb_158189_010 Hb_158189_010 Hb_001498_050--Hb_158189_010 Hb_156850_050 Hb_156850_050 Hb_001498_050--Hb_156850_050 Hb_004450_090 Hb_004450_090 Hb_061783_010--Hb_004450_090 Hb_061783_010--Hb_004102_200 Hb_061783_010--Hb_029238_040 Hb_007545_220 Hb_007545_220 Hb_061783_010--Hb_007545_220 Hb_061783_010--Hb_156850_050 Hb_061783_010--Hb_000984_110 Hb_005048_090 Hb_005048_090 Hb_000984_110--Hb_005048_090 Hb_000230_550 Hb_000230_550 Hb_000984_110--Hb_000230_550 Hb_001295_050 Hb_001295_050 Hb_000984_110--Hb_001295_050 Hb_000172_070 Hb_000172_070 Hb_000984_110--Hb_000172_070 Hb_000984_110--Hb_004102_200 Hb_000983_130 Hb_000983_130 Hb_004102_200--Hb_000983_130 Hb_004102_200--Hb_029238_040 Hb_004102_200--Hb_004450_090 Hb_152277_010 Hb_152277_010 Hb_004102_200--Hb_152277_010 Hb_004102_200--Hb_156850_050 Hb_029238_040--Hb_156850_050 Hb_001401_120 Hb_001401_120 Hb_029238_040--Hb_001401_120 Hb_029238_040--Hb_000983_130 Hb_007579_030 Hb_007579_030 Hb_029238_040--Hb_007579_030 Hb_029238_040--Hb_004450_090 Hb_005675_070 Hb_005675_070 Hb_158189_010--Hb_005675_070 Hb_005211_210 Hb_005211_210 Hb_158189_010--Hb_005211_210 Hb_002043_070 Hb_002043_070 Hb_158189_010--Hb_002043_070 Hb_000201_010 Hb_000201_010 Hb_158189_010--Hb_000201_010 Hb_158189_010--Hb_000983_130 Hb_001541_210 Hb_001541_210 Hb_158189_010--Hb_001541_210 Hb_156850_050--Hb_007579_030 Hb_156850_050--Hb_001401_120 Hb_000096_050 Hb_000096_050 Hb_156850_050--Hb_000096_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0979218 0.0169087 0.188753 0 0.0198855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.083096

CAGE analysis