Hb_096077_010

Information

Type -
Description -
Location Contig96077: 89-545
Sequence    

Annotation

kegg
ID rcu:RCOM_0491920
description Desacetoxyvindoline 4-hydroxylase, putative (EC:1.14.11.20)
nr
ID XP_002529304.1
description Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
swissprot
ID Q8H1S4
description 1-aminocyclopropane-1-carboxylate oxidase homolog 3 OS=Arabidopsis thaliana GN=At1g06650 PE=2 SV=1
trembl
ID B9STI5
description Desacetoxyvindoline 4-hydroxylase, putative OS=Ricinus communis GN=RCOM_0491920 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_096077_010 0.0 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
2 Hb_003711_030 0.3249870437 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
3 Hb_001706_030 0.3349515598 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
4 Hb_000165_150 0.3355895818 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
5 Hb_011478_010 0.3386919162 - - -
6 Hb_167183_010 0.3431834007 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_002122_020 0.3538298835 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
8 Hb_000419_100 0.3570908666 - - -
9 Hb_000711_020 0.36212868 - - major allergen Pru ar 1-like [Jatropha curcas]
10 Hb_001899_020 0.3837293524 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 [Jatropha curcas]
11 Hb_176819_010 0.3870250413 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
12 Hb_143714_010 0.3876641513 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Populus euphratica]
13 Hb_000172_130 0.393683089 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
14 Hb_014720_130 0.3944508276 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
15 Hb_002014_070 0.4008255391 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_086993_010 0.4018938427 - - -
17 Hb_057451_040 0.4028666464 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_022132_020 0.4050399147 - - hypothetical protein TRIUR3_12476 [Triticum urartu]
19 Hb_000710_090 0.4074679208 - - PREDICTED: uncharacterized protein LOC104583249 [Brachypodium distachyon]
20 Hb_126395_010 0.4086473264 - - hypothetical protein VITISV_043980 [Vitis vinifera]

Gene co-expression network

sample Hb_096077_010 Hb_096077_010 Hb_003711_030 Hb_003711_030 Hb_096077_010--Hb_003711_030 Hb_001706_030 Hb_001706_030 Hb_096077_010--Hb_001706_030 Hb_000165_150 Hb_000165_150 Hb_096077_010--Hb_000165_150 Hb_011478_010 Hb_011478_010 Hb_096077_010--Hb_011478_010 Hb_167183_010 Hb_167183_010 Hb_096077_010--Hb_167183_010 Hb_002122_020 Hb_002122_020 Hb_096077_010--Hb_002122_020 Hb_003711_030--Hb_011478_010 Hb_057451_040 Hb_057451_040 Hb_003711_030--Hb_057451_040 Hb_003711_030--Hb_167183_010 Hb_000268_100 Hb_000268_100 Hb_003711_030--Hb_000268_100 Hb_002025_090 Hb_002025_090 Hb_003711_030--Hb_002025_090 Hb_003711_030--Hb_002122_020 Hb_000419_100 Hb_000419_100 Hb_001706_030--Hb_000419_100 Hb_001899_020 Hb_001899_020 Hb_001706_030--Hb_001899_020 Hb_051731_010 Hb_051731_010 Hb_001706_030--Hb_051731_010 Hb_086993_010 Hb_086993_010 Hb_001706_030--Hb_086993_010 Hb_176819_010 Hb_176819_010 Hb_001706_030--Hb_176819_010 Hb_005656_130 Hb_005656_130 Hb_001706_030--Hb_005656_130 Hb_089419_010 Hb_089419_010 Hb_000165_150--Hb_089419_010 Hb_000165_150--Hb_003711_030 Hb_062482_010 Hb_062482_010 Hb_000165_150--Hb_062482_010 Hb_000172_130 Hb_000172_130 Hb_000165_150--Hb_000172_130 Hb_000165_150--Hb_011478_010 Hb_000165_150--Hb_167183_010 Hb_011478_010--Hb_167183_010 Hb_011478_010--Hb_057451_040 Hb_011478_010--Hb_000268_100 Hb_011478_010--Hb_002025_090 Hb_011478_010--Hb_002122_020 Hb_141425_010 Hb_141425_010 Hb_167183_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_167183_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_167183_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_167183_010--Hb_009268_030 Hb_088410_010 Hb_088410_010 Hb_002122_020--Hb_088410_010 Hb_033623_040 Hb_033623_040 Hb_002122_020--Hb_033623_040 Hb_002473_140 Hb_002473_140 Hb_002122_020--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002122_020--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_002122_020--Hb_065943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.193607 0 0 0.469853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.316825 0 0.692752

CAGE analysis