Hb_058702_020

Information

Type -
Description -
Location Contig58702: 33146-39296
Sequence    

Annotation

kegg
ID pop:POPTR_0535s00220g
description hypothetical protein
nr
ID XP_010267664.1
description PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID U7E0R4
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0535s00220g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_058702_020 0.0 - - PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
2 Hb_051437_010 0.2028746485 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
3 Hb_000976_030 0.2304970414 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
4 Hb_001252_200 0.231421321 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
5 Hb_008029_020 0.2322385646 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
6 Hb_178041_010 0.2339979575 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
7 Hb_074979_030 0.2368440647 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
8 Hb_000003_180 0.2405010248 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009119_020 0.2409386717 - - hypothetical protein CISIN_1g033708mg [Citrus sinensis]
10 Hb_084470_010 0.2473131499 - - Disease resistance protein RPS5, putative [Ricinus communis]
11 Hb_051424_010 0.2473859872 - - PREDICTED: putative methyltransferase At1g22800 [Jatropha curcas]
12 Hb_002742_070 0.2510128788 - - PREDICTED: villin-4-like [Jatropha curcas]
13 Hb_121467_010 0.2540403081 - - tubulin-specific chaperone E, putative [Ricinus communis]
14 Hb_000136_190 0.256301898 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
15 Hb_001005_150 0.2601769159 - - -
16 Hb_000617_170 0.2605380017 - - -
17 Hb_130134_020 0.2618596518 - - -
18 Hb_007333_040 0.2622018438 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
19 Hb_088428_010 0.2638120374 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
20 Hb_046120_010 0.2654811416 - - -

Gene co-expression network

sample Hb_058702_020 Hb_058702_020 Hb_051437_010 Hb_051437_010 Hb_058702_020--Hb_051437_010 Hb_000976_030 Hb_000976_030 Hb_058702_020--Hb_000976_030 Hb_001252_200 Hb_001252_200 Hb_058702_020--Hb_001252_200 Hb_008029_020 Hb_008029_020 Hb_058702_020--Hb_008029_020 Hb_178041_010 Hb_178041_010 Hb_058702_020--Hb_178041_010 Hb_074979_030 Hb_074979_030 Hb_058702_020--Hb_074979_030 Hb_051424_010 Hb_051424_010 Hb_051437_010--Hb_051424_010 Hb_002742_070 Hb_002742_070 Hb_051437_010--Hb_002742_070 Hb_051437_010--Hb_178041_010 Hb_009119_040 Hb_009119_040 Hb_051437_010--Hb_009119_040 Hb_051437_010--Hb_008029_020 Hb_009119_020 Hb_009119_020 Hb_051437_010--Hb_009119_020 Hb_000617_170 Hb_000617_170 Hb_000976_030--Hb_000617_170 Hb_002960_050 Hb_002960_050 Hb_000976_030--Hb_002960_050 Hb_000976_030--Hb_178041_010 Hb_000976_030--Hb_051437_010 Hb_000248_010 Hb_000248_010 Hb_000976_030--Hb_000248_010 Hb_169170_010 Hb_169170_010 Hb_000976_030--Hb_169170_010 Hb_001005_150 Hb_001005_150 Hb_001252_200--Hb_001005_150 Hb_106415_010 Hb_106415_010 Hb_001252_200--Hb_106415_010 Hb_007083_020 Hb_007083_020 Hb_001252_200--Hb_007083_020 Hb_001252_200--Hb_051424_010 Hb_013691_010 Hb_013691_010 Hb_001252_200--Hb_013691_010 Hb_000087_030 Hb_000087_030 Hb_001252_200--Hb_000087_030 Hb_002235_120 Hb_002235_120 Hb_008029_020--Hb_002235_120 Hb_000130_190 Hb_000130_190 Hb_008029_020--Hb_000130_190 Hb_008029_020--Hb_051424_010 Hb_019053_020 Hb_019053_020 Hb_008029_020--Hb_019053_020 Hb_001508_020 Hb_001508_020 Hb_008029_020--Hb_001508_020 Hb_178041_010--Hb_002742_070 Hb_130134_030 Hb_130134_030 Hb_178041_010--Hb_130134_030 Hb_002815_060 Hb_002815_060 Hb_178041_010--Hb_002815_060 Hb_088428_010 Hb_088428_010 Hb_178041_010--Hb_088428_010 Hb_171788_010 Hb_171788_010 Hb_178041_010--Hb_171788_010 Hb_001418_060 Hb_001418_060 Hb_074979_030--Hb_001418_060 Hb_074979_030--Hb_130134_030 Hb_001385_090 Hb_001385_090 Hb_074979_030--Hb_001385_090 Hb_074979_030--Hb_178041_010 Hb_070385_010 Hb_070385_010 Hb_074979_030--Hb_070385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0908933 0.215209 0.106259 0.431986 0.435616 1.6162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0504719 0 0.306046 0.203381

CAGE analysis