Hb_025964_030

Information

Type transcription factor
Description TF Family: TRAF
Location Contig25964: 17767-20988
Sequence    

Annotation

kegg
ID vvi:100243007
description BTB/POZ domain-containing protein At1g55760
nr
ID XP_012078497.1
description PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
swissprot
ID Q680K8
description BTB/POZ domain-containing protein At1g55760 OS=Arabidopsis thaliana GN=At1g55760 PE=2 SV=1
trembl
ID A0A067K8S1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13181 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26915: 18599-19881 , PASA_asmbl_26916: 20539-20777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025964_030 0.0 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
2 Hb_000062_580 0.1397635949 - - ATP binding protein, putative [Ricinus communis]
3 Hb_003020_310 0.1408609873 - - glycosyltransferase, putative [Ricinus communis]
4 Hb_001437_220 0.1486524947 - - Transmembrane protein, putative [Ricinus communis]
5 Hb_001035_040 0.1507768561 - - unnamed protein product [Coffea canephora]
6 Hb_007047_010 0.1531026095 - - PREDICTED: expansin-A13 [Jatropha curcas]
7 Hb_000922_170 0.1544526705 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
8 Hb_003050_230 0.1557385495 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009913_030 0.1557986631 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
10 Hb_000907_090 0.1571954612 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
11 Hb_002214_050 0.1572010414 - - PREDICTED: probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 [Jatropha curcas]
12 Hb_002026_190 0.1603675639 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
13 Hb_003038_180 0.1616477628 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
14 Hb_004738_010 0.1625201969 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
15 Hb_000526_020 0.1625292264 - - thioredoxin-like family protein [Hevea brasiliensis]
16 Hb_002660_160 0.1639365015 - - protein binding protein, putative [Ricinus communis]
17 Hb_121089_070 0.1693875146 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
18 Hb_007021_020 0.171172826 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
19 Hb_001711_030 0.1745451839 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
20 Hb_000788_120 0.1749070918 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_025964_030 Hb_025964_030 Hb_000062_580 Hb_000062_580 Hb_025964_030--Hb_000062_580 Hb_003020_310 Hb_003020_310 Hb_025964_030--Hb_003020_310 Hb_001437_220 Hb_001437_220 Hb_025964_030--Hb_001437_220 Hb_001035_040 Hb_001035_040 Hb_025964_030--Hb_001035_040 Hb_007047_010 Hb_007047_010 Hb_025964_030--Hb_007047_010 Hb_000922_170 Hb_000922_170 Hb_025964_030--Hb_000922_170 Hb_003038_180 Hb_003038_180 Hb_000062_580--Hb_003038_180 Hb_000526_020 Hb_000526_020 Hb_000062_580--Hb_000526_020 Hb_001999_120 Hb_001999_120 Hb_000062_580--Hb_001999_120 Hb_007021_020 Hb_007021_020 Hb_000062_580--Hb_007021_020 Hb_003581_090 Hb_003581_090 Hb_000062_580--Hb_003581_090 Hb_001722_040 Hb_001722_040 Hb_000062_580--Hb_001722_040 Hb_007120_070 Hb_007120_070 Hb_003020_310--Hb_007120_070 Hb_078633_010 Hb_078633_010 Hb_003020_310--Hb_078633_010 Hb_000077_410 Hb_000077_410 Hb_003020_310--Hb_000077_410 Hb_023214_010 Hb_023214_010 Hb_003020_310--Hb_023214_010 Hb_148121_010 Hb_148121_010 Hb_003020_310--Hb_148121_010 Hb_003020_310--Hb_001035_040 Hb_002214_050 Hb_002214_050 Hb_001437_220--Hb_002214_050 Hb_000120_750 Hb_000120_750 Hb_001437_220--Hb_000120_750 Hb_000045_190 Hb_000045_190 Hb_001437_220--Hb_000045_190 Hb_003050_230 Hb_003050_230 Hb_001437_220--Hb_003050_230 Hb_010172_030 Hb_010172_030 Hb_001437_220--Hb_010172_030 Hb_000333_090 Hb_000333_090 Hb_001437_220--Hb_000333_090 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_000107_070 Hb_000107_070 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001741_090 Hb_001741_090 Hb_001035_040--Hb_001741_090 Hb_001035_040--Hb_003038_180 Hb_001035_040--Hb_148121_010 Hb_002026_190 Hb_002026_190 Hb_007047_010--Hb_002026_190 Hb_002660_160 Hb_002660_160 Hb_007047_010--Hb_002660_160 Hb_002749_100 Hb_002749_100 Hb_007047_010--Hb_002749_100 Hb_002326_030 Hb_002326_030 Hb_007047_010--Hb_002326_030 Hb_007047_010--Hb_007021_020 Hb_002352_010 Hb_002352_010 Hb_007047_010--Hb_002352_010 Hb_000046_260 Hb_000046_260 Hb_000922_170--Hb_000046_260 Hb_000188_130 Hb_000188_130 Hb_000922_170--Hb_000188_130 Hb_001045_080 Hb_001045_080 Hb_000922_170--Hb_001045_080 Hb_004116_080 Hb_004116_080 Hb_000922_170--Hb_004116_080 Hb_000161_050 Hb_000161_050 Hb_000922_170--Hb_000161_050 Hb_007140_020 Hb_007140_020 Hb_000922_170--Hb_007140_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.9583 1.34185 1.1682 10.3494 2.97935 23.1218
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.6349 42.4485 26.3655 2.89309 5.08396

CAGE analysis