Hb_012092_020

Information

Type transcription factor
Description TF Family: MYB
Location Contig12092: 7344-9060
Sequence    

Annotation

kegg
ID rcu:RCOM_0340090
description r2r3-myb transcription factor, putative
nr
ID XP_002531848.1
description r2r3-myb transcription factor, putative [Ricinus communis]
swissprot
ID Q9FDW1
description Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1
trembl
ID B9T0S9
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0340090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_020 0.0 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
2 Hb_003164_010 0.2359872049 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_000243_230 0.2531425316 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000856_270 0.2581579628 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
5 Hb_004007_140 0.2742727741 - - PREDICTED: cyclin-D5-1-like isoform X1 [Jatropha curcas]
6 Hb_001491_020 0.2784568328 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
7 Hb_000071_060 0.2838660421 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005946_020 0.289065482 - - Pleiotropic drug resistance protein 4 [Triticum urartu]
9 Hb_003813_180 0.2918170109 - - sterol desaturase, putative [Ricinus communis]
10 Hb_000367_250 0.2923300764 - - unnamed protein product [Vitis vinifera]
11 Hb_003638_040 0.292793757 - - kinesin heavy chain, putative [Ricinus communis]
12 Hb_000260_040 0.2933963672 - - PREDICTED: uncharacterized protein LOC105649093 [Jatropha curcas]
13 Hb_008195_060 0.2976904475 transcription factor TF Family: NAC NAC transcription factor 018 [Jatropha curcas]
14 Hb_005237_020 0.299324984 - - Kinesin heavy chain, putative [Ricinus communis]
15 Hb_001105_120 0.2996064456 - - glucose-1-phosphate adenylyltransferase, putative [Ricinus communis]
16 Hb_001504_210 0.3029424137 - - PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Jatropha curcas]
17 Hb_006889_020 0.3043651609 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_005779_020 0.3046429644 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005504_040 0.3083847589 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000206_030 0.3087901787 - - PREDICTED: uncharacterized protein LOC105639682 [Jatropha curcas]

Gene co-expression network

sample Hb_012092_020 Hb_012092_020 Hb_003164_010 Hb_003164_010 Hb_012092_020--Hb_003164_010 Hb_000243_230 Hb_000243_230 Hb_012092_020--Hb_000243_230 Hb_000856_270 Hb_000856_270 Hb_012092_020--Hb_000856_270 Hb_004007_140 Hb_004007_140 Hb_012092_020--Hb_004007_140 Hb_001491_020 Hb_001491_020 Hb_012092_020--Hb_001491_020 Hb_000071_060 Hb_000071_060 Hb_012092_020--Hb_000071_060 Hb_001728_120 Hb_001728_120 Hb_003164_010--Hb_001728_120 Hb_001587_170 Hb_001587_170 Hb_003164_010--Hb_001587_170 Hb_000367_250 Hb_000367_250 Hb_003164_010--Hb_000367_250 Hb_003164_010--Hb_004007_140 Hb_002045_080 Hb_002045_080 Hb_003164_010--Hb_002045_080 Hb_003164_010--Hb_000856_270 Hb_000243_230--Hb_000071_060 Hb_008686_040 Hb_008686_040 Hb_000243_230--Hb_008686_040 Hb_001140_190 Hb_001140_190 Hb_000243_230--Hb_001140_190 Hb_001662_120 Hb_001662_120 Hb_000243_230--Hb_001662_120 Hb_000072_230 Hb_000072_230 Hb_000243_230--Hb_000072_230 Hb_000438_160 Hb_000438_160 Hb_000243_230--Hb_000438_160 Hb_000856_270--Hb_001140_190 Hb_000856_270--Hb_000243_230 Hb_000856_270--Hb_000071_060 Hb_000856_270--Hb_000438_160 Hb_000856_270--Hb_004007_140 Hb_000856_270--Hb_001491_020 Hb_001504_210 Hb_001504_210 Hb_004007_140--Hb_001504_210 Hb_001817_040 Hb_001817_040 Hb_004007_140--Hb_001817_040 Hb_004007_140--Hb_000438_160 Hb_004007_140--Hb_001140_190 Hb_000847_130 Hb_000847_130 Hb_004007_140--Hb_000847_130 Hb_004007_140--Hb_001491_020 Hb_001544_050 Hb_001544_050 Hb_001491_020--Hb_001544_050 Hb_001491_020--Hb_001504_210 Hb_001491_020--Hb_000438_160 Hb_000465_410 Hb_000465_410 Hb_001491_020--Hb_000465_410 Hb_001491_020--Hb_000847_130 Hb_001491_020--Hb_001817_040 Hb_000071_060--Hb_008686_040 Hb_000331_170 Hb_000331_170 Hb_000071_060--Hb_000331_170 Hb_000073_040 Hb_000073_040 Hb_000071_060--Hb_000073_040 Hb_000375_220 Hb_000375_220 Hb_000071_060--Hb_000375_220 Hb_000071_060--Hb_000072_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.229185 0.10458 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0424763 0 0.0620298 0 0.0689957

CAGE analysis