Hb_009771_070

Information

Type -
Description -
Location Contig9771: 79062-80336
Sequence    

Annotation

kegg
ID pop:POPTR_0016s12140g
description POPTRDRAFT_257659; hypothetical protein
nr
ID XP_002323569.2
description hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
swissprot
ID P0C8Q4
description Uncharacterized protein At4g19900 OS=Arabidopsis thaliana GN=At4g19900 PE=2 SV=1
trembl
ID B9IG76
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s12140g PE=4 SV=2
Gene Ontology
ID GO:0050512
description lactosylceramide 4-alpha-galactosyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009771_070 0.0 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
2 Hb_049677_010 0.1150445818 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_000402_220 0.1823488787 - - multidrug resistance pump, putative [Ricinus communis]
4 Hb_004324_200 0.1894311822 - - PREDICTED: transcription factor TRY-like [Populus euphratica]
5 Hb_003064_010 0.1974189116 - - Senescence-related gene 1 [Theobroma cacao]
6 Hb_031336_020 0.1984861074 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001473_100 0.2010377006 - - chalcone synthase 1 [Jatropha curcas]
8 Hb_111985_160 0.2018663319 - - hypothetical protein B456_010G008900 [Gossypium raimondii]
9 Hb_004055_080 0.2035636913 - - calmodulin binding protein, putative [Ricinus communis]
10 Hb_058526_010 0.2053355848 - - -
11 Hb_131864_020 0.2074309982 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]
12 Hb_004021_100 0.2082349565 - - -
13 Hb_000556_140 0.2103629414 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
14 Hb_000194_080 0.2110505228 - - hypothetical protein JCGZ_18743 [Jatropha curcas]
15 Hb_000029_420 0.2118729662 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
16 Hb_006466_020 0.2124489194 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
17 Hb_003786_060 0.2169201348 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
18 Hb_111693_010 0.2179876105 - - hypothetical protein JCGZ_21650 [Jatropha curcas]
19 Hb_001268_330 0.2224225759 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_003166_040 0.2236913421 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_009771_070 Hb_009771_070 Hb_049677_010 Hb_049677_010 Hb_009771_070--Hb_049677_010 Hb_000402_220 Hb_000402_220 Hb_009771_070--Hb_000402_220 Hb_004324_200 Hb_004324_200 Hb_009771_070--Hb_004324_200 Hb_003064_010 Hb_003064_010 Hb_009771_070--Hb_003064_010 Hb_031336_020 Hb_031336_020 Hb_009771_070--Hb_031336_020 Hb_001473_100 Hb_001473_100 Hb_009771_070--Hb_001473_100 Hb_049677_010--Hb_003064_010 Hb_000194_080 Hb_000194_080 Hb_049677_010--Hb_000194_080 Hb_004055_080 Hb_004055_080 Hb_049677_010--Hb_004055_080 Hb_000029_420 Hb_000029_420 Hb_049677_010--Hb_000029_420 Hb_049677_010--Hb_001473_100 Hb_000513_110 Hb_000513_110 Hb_000402_220--Hb_000513_110 Hb_006538_070 Hb_006538_070 Hb_000402_220--Hb_006538_070 Hb_006538_050 Hb_006538_050 Hb_000402_220--Hb_006538_050 Hb_001366_250 Hb_001366_250 Hb_000402_220--Hb_001366_250 Hb_000120_710 Hb_000120_710 Hb_000402_220--Hb_000120_710 Hb_003786_060 Hb_003786_060 Hb_000402_220--Hb_003786_060 Hb_004324_200--Hb_003786_060 Hb_004324_200--Hb_006538_070 Hb_000347_530 Hb_000347_530 Hb_004324_200--Hb_000347_530 Hb_002301_420 Hb_002301_420 Hb_004324_200--Hb_002301_420 Hb_004324_200--Hb_006538_050 Hb_164162_020 Hb_164162_020 Hb_004324_200--Hb_164162_020 Hb_003064_010--Hb_000194_080 Hb_003064_010--Hb_000029_420 Hb_004021_100 Hb_004021_100 Hb_003064_010--Hb_004021_100 Hb_001623_400 Hb_001623_400 Hb_003064_010--Hb_001623_400 Hb_003064_010--Hb_004055_080 Hb_031336_020--Hb_002301_420 Hb_031336_020--Hb_000402_220 Hb_000380_210 Hb_000380_210 Hb_031336_020--Hb_000380_210 Hb_000521_340 Hb_000521_340 Hb_031336_020--Hb_000521_340 Hb_025254_020 Hb_025254_020 Hb_031336_020--Hb_025254_020 Hb_018133_110 Hb_018133_110 Hb_031336_020--Hb_018133_110 Hb_000631_130 Hb_000631_130 Hb_001473_100--Hb_000631_130 Hb_025469_040 Hb_025469_040 Hb_001473_100--Hb_025469_040 Hb_131864_020 Hb_131864_020 Hb_001473_100--Hb_131864_020 Hb_001473_100--Hb_004055_080 Hb_000038_090 Hb_000038_090 Hb_001473_100--Hb_000038_090 Hb_007044_070 Hb_007044_070 Hb_001473_100--Hb_007044_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0632423 0.0884099 0.0924058 0 0.0145259
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0377476 0 0 0.46341 0

CAGE analysis