Hb_005695_100

Information

Type -
Description -
Location Contig5695: 106370-107418
Sequence    

Annotation

kegg
ID pop:POPTR_0002s09350g
description POPTRDRAFT_551545; senescence-associated family protein
nr
ID XP_012078100.1
description PREDICTED: uncharacterized protein LOC105638839 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8Y5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11988 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49274: 106126-107388
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005695_100 0.0 - - PREDICTED: uncharacterized protein LOC105638839 [Jatropha curcas]
2 Hb_002613_040 0.140767577 - - phosphate translocator-related family protein [Populus trichocarpa]
3 Hb_002815_020 0.1434576062 transcription factor TF Family: G2-like Homeodomain-like superfamily protein isoform 2 [Theobroma cacao]
4 Hb_000103_130 0.1536477029 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
5 Hb_000544_190 0.1566736119 - - ARF GTPase activator, putative [Ricinus communis]
6 Hb_058471_010 0.1589036471 - - PREDICTED: clathrin light chain 1 [Jatropha curcas]
7 Hb_006355_060 0.1594600831 - - PREDICTED: transcription factor PIF1-like isoform X2 [Jatropha curcas]
8 Hb_000236_290 0.1638053505 - - organic anion transporter, putative [Ricinus communis]
9 Hb_000302_320 0.1658028519 - - hypothetical protein JCGZ_26057 [Jatropha curcas]
10 Hb_001235_120 0.1663263404 - - hypothetical protein JCGZ_03395 [Jatropha curcas]
11 Hb_001538_080 0.1687969827 - - PREDICTED: QWRF motif-containing protein 2 isoform X2 [Jatropha curcas]
12 Hb_163950_050 0.1691082774 - - protein binding protein, putative [Ricinus communis]
13 Hb_012395_110 0.1743039051 - - PREDICTED: peroxygenase [Jatropha curcas]
14 Hb_000579_110 0.1756159148 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
15 Hb_019516_070 0.1778179707 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
16 Hb_002886_010 0.1781918999 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001699_080 0.1782370268 - - unnamed protein product [Coffea canephora]
18 Hb_005305_040 0.1786587867 transcription factor TF Family: C3H transcription factor, putative [Ricinus communis]
19 Hb_003125_210 0.1788417867 - - Phospholipase C 4 precursor, putative [Ricinus communis]
20 Hb_015934_090 0.1788696333 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]

Gene co-expression network

sample Hb_005695_100 Hb_005695_100 Hb_002613_040 Hb_002613_040 Hb_005695_100--Hb_002613_040 Hb_002815_020 Hb_002815_020 Hb_005695_100--Hb_002815_020 Hb_000103_130 Hb_000103_130 Hb_005695_100--Hb_000103_130 Hb_000544_190 Hb_000544_190 Hb_005695_100--Hb_000544_190 Hb_058471_010 Hb_058471_010 Hb_005695_100--Hb_058471_010 Hb_006355_060 Hb_006355_060 Hb_005695_100--Hb_006355_060 Hb_002613_040--Hb_000103_130 Hb_163950_050 Hb_163950_050 Hb_002613_040--Hb_163950_050 Hb_114917_010 Hb_114917_010 Hb_002613_040--Hb_114917_010 Hb_002613_040--Hb_006355_060 Hb_003097_220 Hb_003097_220 Hb_002613_040--Hb_003097_220 Hb_006750_010 Hb_006750_010 Hb_002613_040--Hb_006750_010 Hb_003125_210 Hb_003125_210 Hb_002815_020--Hb_003125_210 Hb_001159_230 Hb_001159_230 Hb_002815_020--Hb_001159_230 Hb_002815_020--Hb_000544_190 Hb_006002_050 Hb_006002_050 Hb_002815_020--Hb_006002_050 Hb_004696_010 Hb_004696_010 Hb_002815_020--Hb_004696_010 Hb_012395_110 Hb_012395_110 Hb_002815_020--Hb_012395_110 Hb_001699_080 Hb_001699_080 Hb_000103_130--Hb_001699_080 Hb_001538_080 Hb_001538_080 Hb_000103_130--Hb_001538_080 Hb_001210_060 Hb_001210_060 Hb_000103_130--Hb_001210_060 Hb_000103_130--Hb_163950_050 Hb_004032_190 Hb_004032_190 Hb_000103_130--Hb_004032_190 Hb_000302_320 Hb_000302_320 Hb_000544_190--Hb_000302_320 Hb_003054_070 Hb_003054_070 Hb_000544_190--Hb_003054_070 Hb_000544_190--Hb_003125_210 Hb_023308_010 Hb_023308_010 Hb_000544_190--Hb_023308_010 Hb_011861_090 Hb_011861_090 Hb_000544_190--Hb_011861_090 Hb_058471_010--Hb_006355_060 Hb_001366_300 Hb_001366_300 Hb_058471_010--Hb_001366_300 Hb_000000_050 Hb_000000_050 Hb_058471_010--Hb_000000_050 Hb_001232_040 Hb_001232_040 Hb_058471_010--Hb_001232_040 Hb_005305_040 Hb_005305_040 Hb_058471_010--Hb_005305_040 Hb_058471_010--Hb_163950_050 Hb_006355_060--Hb_003097_220 Hb_003147_040 Hb_003147_040 Hb_006355_060--Hb_003147_040 Hb_006355_060--Hb_001232_040 Hb_006355_060--Hb_163950_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.690701 17.8577 32.6744 103.963 0.0512575 0.346523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06759 1.18518 16.6952 4.01033 83.9054

CAGE analysis