Hb_005615_050

Information

Type -
Description -
Location Contig5615: 85756-88712
Sequence    

Annotation

kegg
ID cit:102625297
description uncharacterized LOC102625297
nr
ID XP_012075763.1
description PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A2Q5D8
description Thioredoxin-like fold OS=Medicago truncatula GN=MtrDRAFT_AC161399g7v2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005615_050 0.0 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
2 Hb_001391_140 0.267963492 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]
3 Hb_018954_010 0.2761371056 - - -
4 Hb_001364_040 0.2832636792 - - -
5 Hb_000322_190 0.2852752268 - - -
6 Hb_091433_040 0.2876646301 - - PREDICTED: josephin-like protein [Jatropha curcas]
7 Hb_008790_050 0.2977255202 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000172_570 0.298358412 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
9 Hb_000103_110 0.2988116492 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
10 Hb_000972_010 0.3080372266 - - PREDICTED: kinesin KP1 [Jatropha curcas]
11 Hb_000062_440 0.3136861387 - - hypothetical protein JCGZ_17832 [Jatropha curcas]
12 Hb_000193_240 0.314873026 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
13 Hb_000784_040 0.3149559969 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
14 Hb_000771_130 0.3183949349 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_005914_070 0.3212447248 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000479_080 0.3223848191 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
17 Hb_003599_070 0.3228178179 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000042_240 0.3237965948 - - -
19 Hb_113906_010 0.3247499091 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
20 Hb_000157_040 0.326104211 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_005615_050 Hb_005615_050 Hb_001391_140 Hb_001391_140 Hb_005615_050--Hb_001391_140 Hb_018954_010 Hb_018954_010 Hb_005615_050--Hb_018954_010 Hb_001364_040 Hb_001364_040 Hb_005615_050--Hb_001364_040 Hb_000322_190 Hb_000322_190 Hb_005615_050--Hb_000322_190 Hb_091433_040 Hb_091433_040 Hb_005615_050--Hb_091433_040 Hb_008790_050 Hb_008790_050 Hb_005615_050--Hb_008790_050 Hb_156473_010 Hb_156473_010 Hb_001391_140--Hb_156473_010 Hb_000784_040 Hb_000784_040 Hb_001391_140--Hb_000784_040 Hb_042223_010 Hb_042223_010 Hb_001391_140--Hb_042223_010 Hb_003599_070 Hb_003599_070 Hb_001391_140--Hb_003599_070 Hb_001391_140--Hb_091433_040 Hb_000227_200 Hb_000227_200 Hb_001391_140--Hb_000227_200 Hb_100873_030 Hb_100873_030 Hb_018954_010--Hb_100873_030 Hb_000972_010 Hb_000972_010 Hb_018954_010--Hb_000972_010 Hb_001534_170 Hb_001534_170 Hb_018954_010--Hb_001534_170 Hb_000141_240 Hb_000141_240 Hb_018954_010--Hb_000141_240 Hb_017124_020 Hb_017124_020 Hb_018954_010--Hb_017124_020 Hb_000995_070 Hb_000995_070 Hb_018954_010--Hb_000995_070 Hb_000997_330 Hb_000997_330 Hb_001364_040--Hb_000997_330 Hb_000988_040 Hb_000988_040 Hb_001364_040--Hb_000988_040 Hb_000193_240 Hb_000193_240 Hb_001364_040--Hb_000193_240 Hb_000638_020 Hb_000638_020 Hb_001364_040--Hb_000638_020 Hb_000832_230 Hb_000832_230 Hb_001364_040--Hb_000832_230 Hb_001143_090 Hb_001143_090 Hb_001364_040--Hb_001143_090 Hb_000614_100 Hb_000614_100 Hb_000322_190--Hb_000614_100 Hb_005568_010 Hb_005568_010 Hb_000322_190--Hb_005568_010 Hb_052941_010 Hb_052941_010 Hb_000322_190--Hb_052941_010 Hb_003913_140 Hb_003913_140 Hb_000322_190--Hb_003913_140 Hb_003286_020 Hb_003286_020 Hb_000322_190--Hb_003286_020 Hb_001902_120 Hb_001902_120 Hb_000322_190--Hb_001902_120 Hb_005914_070 Hb_005914_070 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_091433_040--Hb_000784_040 Hb_003786_090 Hb_003786_090 Hb_008790_050--Hb_003786_090 Hb_002240_040 Hb_002240_040 Hb_008790_050--Hb_002240_040 Hb_039229_010 Hb_039229_010 Hb_008790_050--Hb_039229_010 Hb_005531_010 Hb_005531_010 Hb_008790_050--Hb_005531_010 Hb_033835_020 Hb_033835_020 Hb_008790_050--Hb_033835_020 Hb_008505_020 Hb_008505_020 Hb_008790_050--Hb_008505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0611798 0 0.0405193 0.0570298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0933365 0.220087 0.517128 0 0

CAGE analysis