Hb_005210_030

Information

Type transcription factor
Description TF Family: ERF
Location Contig5210: 37615-38148
Sequence    

Annotation

kegg
ID rcu:RCOM_1102060
description Transcriptional factor TINY, putative
nr
ID XP_002528041.1
description Transcriptional factor TINY, putative [Ricinus communis]
swissprot
ID Q9C9I8
description Ethylene-responsive transcription factor ERF020 OS=Arabidopsis thaliana GN=ERF020 PE=2 SV=1
trembl
ID B9SPX2
description Transcriptional factor TINY, putative OS=Ricinus communis GN=RCOM_1102060 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor erf020

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46741: 37721-38017
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005210_030 0.0 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
2 Hb_000336_060 0.1673008821 - - hypothetical protein JCGZ_26632 [Jatropha curcas]
3 Hb_000283_100 0.177122569 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X2 [Jatropha curcas]
4 Hb_000680_180 0.1820938115 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
5 Hb_010126_030 0.1831752603 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 86 isoform X1 [Jatropha curcas]
6 Hb_002007_070 0.1895305832 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
7 Hb_001579_070 0.1932616222 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
8 Hb_155946_030 0.193417899 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
9 Hb_007894_020 0.1956636836 - - protein translation factor SUI1 homolog 2 [Jatropha curcas]
10 Hb_001999_170 0.2001835137 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
11 Hb_124677_020 0.201604894 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
12 Hb_004899_010 0.2033860239 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
13 Hb_004612_020 0.2046161062 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
14 Hb_002960_100 0.2080836194 - - PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
15 Hb_000260_300 0.2111529128 - - calcium binding protein/cast, putative [Ricinus communis]
16 Hb_000086_620 0.2112308138 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
17 Hb_000627_130 0.2131205288 - - Polcalcin Jun o, putative [Ricinus communis]
18 Hb_109591_010 0.2132183344 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
19 Hb_010964_010 0.2136798574 - - -
20 Hb_002400_020 0.2151763045 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]

Gene co-expression network

sample Hb_005210_030 Hb_005210_030 Hb_000336_060 Hb_000336_060 Hb_005210_030--Hb_000336_060 Hb_000283_100 Hb_000283_100 Hb_005210_030--Hb_000283_100 Hb_000680_180 Hb_000680_180 Hb_005210_030--Hb_000680_180 Hb_010126_030 Hb_010126_030 Hb_005210_030--Hb_010126_030 Hb_002007_070 Hb_002007_070 Hb_005210_030--Hb_002007_070 Hb_001579_070 Hb_001579_070 Hb_005210_030--Hb_001579_070 Hb_124677_020 Hb_124677_020 Hb_000336_060--Hb_124677_020 Hb_001999_170 Hb_001999_170 Hb_000336_060--Hb_001999_170 Hb_000336_060--Hb_010126_030 Hb_000336_060--Hb_000283_100 Hb_000984_290 Hb_000984_290 Hb_000336_060--Hb_000984_290 Hb_022137_020 Hb_022137_020 Hb_000336_060--Hb_022137_020 Hb_000283_100--Hb_010126_030 Hb_001989_060 Hb_001989_060 Hb_000283_100--Hb_001989_060 Hb_004586_130 Hb_004586_130 Hb_000283_100--Hb_004586_130 Hb_000045_140 Hb_000045_140 Hb_000283_100--Hb_000045_140 Hb_000283_100--Hb_000680_180 Hb_011930_120 Hb_011930_120 Hb_000680_180--Hb_011930_120 Hb_000680_180--Hb_010126_030 Hb_000680_180--Hb_002007_070 Hb_000680_180--Hb_001989_060 Hb_000680_180--Hb_001579_070 Hb_010126_030--Hb_001989_060 Hb_010126_030--Hb_004586_130 Hb_061908_030 Hb_061908_030 Hb_010126_030--Hb_061908_030 Hb_010126_030--Hb_001999_170 Hb_000162_130 Hb_000162_130 Hb_002007_070--Hb_000162_130 Hb_002007_070--Hb_010126_030 Hb_000256_180 Hb_000256_180 Hb_002007_070--Hb_000256_180 Hb_004612_020 Hb_004612_020 Hb_002007_070--Hb_004612_020 Hb_002007_070--Hb_000984_290 Hb_001579_070--Hb_011930_120 Hb_000003_240 Hb_000003_240 Hb_001579_070--Hb_000003_240 Hb_155946_030 Hb_155946_030 Hb_001579_070--Hb_155946_030 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_031108_010 Hb_031108_010 Hb_001579_070--Hb_031108_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0517315 2.50975 1.98393 0.706223 0.0521246 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.189702 0.325493 0 0.179786

CAGE analysis