Hb_004970_220

Information

Type -
Description -
Location Contig4970: 155397-160164
Sequence    

Annotation

kegg
ID rcu:RCOM_1590290
description hypothetical protein
nr
ID XP_012071657.1
description PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9R7B9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1590290 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45569: 155429-159790
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004970_220 0.0 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
2 Hb_002811_350 0.1120747924 - - calcium ion binding protein, putative [Ricinus communis]
3 Hb_157022_010 0.1121070438 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
4 Hb_003849_130 0.1189250618 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
5 Hb_001328_040 0.1238900099 - - PREDICTED: uncharacterized protein LOC105636146 [Jatropha curcas]
6 Hb_032264_120 0.1241245488 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
7 Hb_000505_040 0.1246956012 - - -
8 Hb_007477_070 0.1298179429 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
9 Hb_000694_040 0.1322489011 - - Uncharacterized protein isoform 1 [Theobroma cacao]
10 Hb_001221_210 0.1330905429 - - thiF family protein [Populus trichocarpa]
11 Hb_000000_360 0.1343460814 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
12 Hb_000329_200 0.1382828507 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
13 Hb_000362_200 0.139172928 - - exonuclease family protein [Populus trichocarpa]
14 Hb_055062_020 0.1403964862 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
15 Hb_002811_260 0.1421692576 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
16 Hb_004070_020 0.1422376284 - - rhythmically-expressed protein 2 protein, putative [Ricinus communis]
17 Hb_002477_300 0.1424854147 - - transcription factor, putative [Ricinus communis]
18 Hb_001811_050 0.1425256638 - - PREDICTED: protein EXECUTER 1, chloroplastic [Jatropha curcas]
19 Hb_026549_020 0.1426318262 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_008686_080 0.1427563579 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]

Gene co-expression network

sample Hb_004970_220 Hb_004970_220 Hb_002811_350 Hb_002811_350 Hb_004970_220--Hb_002811_350 Hb_157022_010 Hb_157022_010 Hb_004970_220--Hb_157022_010 Hb_003849_130 Hb_003849_130 Hb_004970_220--Hb_003849_130 Hb_001328_040 Hb_001328_040 Hb_004970_220--Hb_001328_040 Hb_032264_120 Hb_032264_120 Hb_004970_220--Hb_032264_120 Hb_000505_040 Hb_000505_040 Hb_004970_220--Hb_000505_040 Hb_001221_210 Hb_001221_210 Hb_002811_350--Hb_001221_210 Hb_000019_210 Hb_000019_210 Hb_002811_350--Hb_000019_210 Hb_007477_070 Hb_007477_070 Hb_002811_350--Hb_007477_070 Hb_005322_040 Hb_005322_040 Hb_002811_350--Hb_005322_040 Hb_001633_050 Hb_001633_050 Hb_002811_350--Hb_001633_050 Hb_004889_020 Hb_004889_020 Hb_157022_010--Hb_004889_020 Hb_000403_060 Hb_000403_060 Hb_157022_010--Hb_000403_060 Hb_001484_070 Hb_001484_070 Hb_157022_010--Hb_001484_070 Hb_000236_040 Hb_000236_040 Hb_157022_010--Hb_000236_040 Hb_026889_030 Hb_026889_030 Hb_157022_010--Hb_026889_030 Hb_000827_050 Hb_000827_050 Hb_157022_010--Hb_000827_050 Hb_055062_020 Hb_055062_020 Hb_003849_130--Hb_055062_020 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_010577_030 Hb_010577_030 Hb_003849_130--Hb_010577_030 Hb_004041_020 Hb_004041_020 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570 Hb_001662_070 Hb_001662_070 Hb_001328_040--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_001328_040--Hb_000815_320 Hb_001328_040--Hb_032264_120 Hb_002811_260 Hb_002811_260 Hb_001328_040--Hb_002811_260 Hb_008847_040 Hb_008847_040 Hb_001328_040--Hb_008847_040 Hb_165132_010 Hb_165132_010 Hb_001328_040--Hb_165132_010 Hb_000982_090 Hb_000982_090 Hb_032264_120--Hb_000982_090 Hb_006570_140 Hb_006570_140 Hb_032264_120--Hb_006570_140 Hb_032264_120--Hb_002811_260 Hb_004800_230 Hb_004800_230 Hb_032264_120--Hb_004800_230 Hb_032264_120--Hb_007477_070 Hb_001512_030 Hb_001512_030 Hb_000505_040--Hb_001512_030 Hb_000505_040--Hb_001633_050 Hb_000505_040--Hb_157022_010 Hb_000505_040--Hb_000236_040 Hb_000505_040--Hb_001484_070 Hb_000270_370 Hb_000270_370 Hb_000505_040--Hb_000270_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.78779 0.266713 3.8798 1.44287 1.93929 2.94006
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.67381 4.82033 2.97526 2.42634 0.722399

CAGE analysis