Hb_002811_350

Information

Type -
Description -
Location Contig2811: 280873-283445
Sequence    

Annotation

kegg
ID rcu:RCOM_0484680
description calcium ion binding protein, putative
nr
ID XP_002531299.1
description calcium ion binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZ80
description Calcium ion binding protein, putative OS=Ricinus communis GN=RCOM_0484680 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding ef hand family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002811_350 0.0 - - calcium ion binding protein, putative [Ricinus communis]
2 Hb_001221_210 0.1001580012 - - thiF family protein [Populus trichocarpa]
3 Hb_000019_210 0.1111126585 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase MAK3 [Jatropha curcas]
4 Hb_007477_070 0.1114251025 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
5 Hb_004970_220 0.1120747924 - - PREDICTED: uncharacterized protein LOC105633642 [Jatropha curcas]
6 Hb_005322_040 0.1210733713 - - 60S ribosomal protein L9, putative [Ricinus communis]
7 Hb_001633_050 0.1216848063 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
8 Hb_003813_030 0.125138391 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
9 Hb_009686_030 0.1255360136 - - -
10 Hb_002995_020 0.1260100113 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
11 Hb_001534_120 0.1263610856 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
12 Hb_003057_090 0.1270608258 - - ATP synthase D chain, mitochondrial, putative [Ricinus communis]
13 Hb_000505_040 0.128130638 - - -
14 Hb_000236_040 0.1281456501 - - PREDICTED: uncharacterized protein LOC105633150 isoform X1 [Jatropha curcas]
15 Hb_001512_060 0.1282676616 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
16 Hb_000694_040 0.1297474396 - - Uncharacterized protein isoform 1 [Theobroma cacao]
17 Hb_000580_090 0.1299350314 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
18 Hb_000329_200 0.1306709679 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
19 Hb_004787_060 0.1307410747 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
20 Hb_000300_160 0.1309749753 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_002811_350 Hb_002811_350 Hb_001221_210 Hb_001221_210 Hb_002811_350--Hb_001221_210 Hb_000019_210 Hb_000019_210 Hb_002811_350--Hb_000019_210 Hb_007477_070 Hb_007477_070 Hb_002811_350--Hb_007477_070 Hb_004970_220 Hb_004970_220 Hb_002811_350--Hb_004970_220 Hb_005322_040 Hb_005322_040 Hb_002811_350--Hb_005322_040 Hb_001633_050 Hb_001633_050 Hb_002811_350--Hb_001633_050 Hb_001221_210--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_001221_210--Hb_002995_020 Hb_000020_060 Hb_000020_060 Hb_001221_210--Hb_000020_060 Hb_004116_190 Hb_004116_190 Hb_001221_210--Hb_004116_190 Hb_000329_200 Hb_000329_200 Hb_001221_210--Hb_000329_200 Hb_001504_110 Hb_001504_110 Hb_001221_210--Hb_001504_110 Hb_001811_050 Hb_001811_050 Hb_000019_210--Hb_001811_050 Hb_002043_190 Hb_002043_190 Hb_000019_210--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000019_210--Hb_005993_040 Hb_003050_080 Hb_003050_080 Hb_000019_210--Hb_003050_080 Hb_001489_060 Hb_001489_060 Hb_000019_210--Hb_001489_060 Hb_007576_040 Hb_007576_040 Hb_000019_210--Hb_007576_040 Hb_001534_120 Hb_001534_120 Hb_007477_070--Hb_001534_120 Hb_025645_010 Hb_025645_010 Hb_007477_070--Hb_025645_010 Hb_001512_060 Hb_001512_060 Hb_007477_070--Hb_001512_060 Hb_001662_070 Hb_001662_070 Hb_007477_070--Hb_001662_070 Hb_000771_120 Hb_000771_120 Hb_007477_070--Hb_000771_120 Hb_007477_070--Hb_007576_040 Hb_157022_010 Hb_157022_010 Hb_004970_220--Hb_157022_010 Hb_003849_130 Hb_003849_130 Hb_004970_220--Hb_003849_130 Hb_001328_040 Hb_001328_040 Hb_004970_220--Hb_001328_040 Hb_032264_120 Hb_032264_120 Hb_004970_220--Hb_032264_120 Hb_000505_040 Hb_000505_040 Hb_004970_220--Hb_000505_040 Hb_004787_060 Hb_004787_060 Hb_005322_040--Hb_004787_060 Hb_000012_220 Hb_000012_220 Hb_005322_040--Hb_000012_220 Hb_010921_010 Hb_010921_010 Hb_005322_040--Hb_010921_010 Hb_013405_090 Hb_013405_090 Hb_005322_040--Hb_013405_090 Hb_011609_100 Hb_011609_100 Hb_005322_040--Hb_011609_100 Hb_005322_040--Hb_001512_060 Hb_001633_050--Hb_004116_190 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_001633_050--Hb_002995_020 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_000656_240 Hb_000656_240 Hb_001633_050--Hb_000656_240 Hb_001512_030 Hb_001512_030 Hb_001633_050--Hb_001512_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.13151 1.88399 10.4874 4.55235 10.9183 5.75762
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.88794 18.1677 10.2388 9.29641 2.68829

CAGE analysis