Hb_004826_020

Information

Type -
Description -
Location Contig4826: 8865-14743
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004826_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_030458_010 0.2254880248 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_001364_030 0.2404743826 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
4 Hb_004048_060 0.283020828 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
5 Hb_012366_020 0.293689058 - - unnamed protein product [Vitis vinifera]
6 Hb_085659_010 0.2941750849 - - PREDICTED: uncharacterized protein LOC104216799 [Nicotiana sylvestris]
7 Hb_000941_070 0.2968621755 - - -
8 Hb_000261_490 0.2975007998 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
9 Hb_009486_190 0.2984770573 - - ATP binding protein, putative [Ricinus communis]
10 Hb_014497_110 0.3022076407 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
11 Hb_026698_010 0.3099037016 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
12 Hb_009974_030 0.3119042138 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
13 Hb_169325_010 0.3124454102 - - PREDICTED: uncharacterized protein LOC103699787, partial [Phoenix dactylifera]
14 Hb_002028_060 0.3145584848 - - -
15 Hb_000500_140 0.3156644396 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
16 Hb_000457_170 0.316049936 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
17 Hb_004607_150 0.3182847622 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
18 Hb_000363_140 0.3193685362 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
19 Hb_017987_070 0.3194811147 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
20 Hb_000951_060 0.3195666256 - - mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004826_020 Hb_004826_020 Hb_030458_010 Hb_030458_010 Hb_004826_020--Hb_030458_010 Hb_001364_030 Hb_001364_030 Hb_004826_020--Hb_001364_030 Hb_004048_060 Hb_004048_060 Hb_004826_020--Hb_004048_060 Hb_012366_020 Hb_012366_020 Hb_004826_020--Hb_012366_020 Hb_085659_010 Hb_085659_010 Hb_004826_020--Hb_085659_010 Hb_000941_070 Hb_000941_070 Hb_004826_020--Hb_000941_070 Hb_000260_310 Hb_000260_310 Hb_030458_010--Hb_000260_310 Hb_003052_040 Hb_003052_040 Hb_030458_010--Hb_003052_040 Hb_007429_030 Hb_007429_030 Hb_030458_010--Hb_007429_030 Hb_030458_010--Hb_004048_060 Hb_025214_130 Hb_025214_130 Hb_030458_010--Hb_025214_130 Hb_000363_140 Hb_000363_140 Hb_001364_030--Hb_000363_140 Hb_005701_030 Hb_005701_030 Hb_001364_030--Hb_005701_030 Hb_033772_050 Hb_033772_050 Hb_001364_030--Hb_033772_050 Hb_001364_030--Hb_000260_310 Hb_016604_020 Hb_016604_020 Hb_001364_030--Hb_016604_020 Hb_009486_190 Hb_009486_190 Hb_001364_030--Hb_009486_190 Hb_014497_110 Hb_014497_110 Hb_004048_060--Hb_014497_110 Hb_000392_330 Hb_000392_330 Hb_004048_060--Hb_000392_330 Hb_008516_020 Hb_008516_020 Hb_004048_060--Hb_008516_020 Hb_002983_030 Hb_002983_030 Hb_004048_060--Hb_002983_030 Hb_000723_160 Hb_000723_160 Hb_004048_060--Hb_000723_160 Hb_001005_070 Hb_001005_070 Hb_004048_060--Hb_001005_070 Hb_002260_090 Hb_002260_090 Hb_012366_020--Hb_002260_090 Hb_030765_020 Hb_030765_020 Hb_012366_020--Hb_030765_020 Hb_000003_840 Hb_000003_840 Hb_012366_020--Hb_000003_840 Hb_002936_050 Hb_002936_050 Hb_012366_020--Hb_002936_050 Hb_000836_500 Hb_000836_500 Hb_012366_020--Hb_000836_500 Hb_000178_110 Hb_000178_110 Hb_012366_020--Hb_000178_110 Hb_004522_040 Hb_004522_040 Hb_085659_010--Hb_004522_040 Hb_002471_170 Hb_002471_170 Hb_085659_010--Hb_002471_170 Hb_026698_010 Hb_026698_010 Hb_085659_010--Hb_026698_010 Hb_180333_010 Hb_180333_010 Hb_085659_010--Hb_180333_010 Hb_004225_180 Hb_004225_180 Hb_085659_010--Hb_004225_180 Hb_000381_080 Hb_000381_080 Hb_085659_010--Hb_000381_080 Hb_080477_050 Hb_080477_050 Hb_000941_070--Hb_080477_050 Hb_002609_220 Hb_002609_220 Hb_000941_070--Hb_002609_220 Hb_000733_030 Hb_000733_030 Hb_000941_070--Hb_000733_030 Hb_000165_010 Hb_000165_010 Hb_000941_070--Hb_000165_010 Hb_001437_240 Hb_001437_240 Hb_000941_070--Hb_001437_240 Hb_000941_070--Hb_012366_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278751 0.0297892 0 0 0 0.014176
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0241268 0.0284801 0.0364167 0 0

CAGE analysis