Hb_002609_220

Information

Type -
Description -
Location Contig2609: 166452-170501
Sequence    

Annotation

kegg
ID tcc:TCM_041642
description Leucine-rich repeat protein kinase family protein, putative
nr
ID XP_007016127.1
description Leucine-rich repeat protein kinase family protein, putative [Theobroma cacao]
swissprot
ID C0LGT6
description LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1
trembl
ID A0A061GW97
description Leucine-rich repeat protein kinase family protein, putative OS=Theobroma cacao GN=TCM_041642 PE=4 SV=1
Gene Ontology
ID GO:0004672
description receptor-like protein kinase at3g47110-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002609_220 0.0 - - Leucine-rich repeat protein kinase family protein, putative [Theobroma cacao]
2 Hb_005532_060 0.1162110037 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
3 Hb_004324_370 0.1292894339 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g49142 [Jatropha curcas]
4 Hb_000223_150 0.130582368 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
5 Hb_006501_040 0.1331715403 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77170 [Jatropha curcas]
6 Hb_001009_310 0.1408033366 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
7 Hb_178968_110 0.141011942 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
8 Hb_007672_050 0.1417379761 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
9 Hb_001157_030 0.1421658285 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Jatropha curcas]
10 Hb_005539_360 0.1438668326 - - kinesin light chain, putative [Ricinus communis]
11 Hb_005488_010 0.1442956548 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002686_290 0.1445505452 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Populus euphratica]
13 Hb_000457_150 0.1448196338 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
14 Hb_004951_040 0.1453039565 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
15 Hb_000614_230 0.1464853865 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
16 Hb_001366_200 0.1484163404 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003266_130 0.1497616095 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
18 Hb_000836_530 0.1510285844 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
19 Hb_055062_030 0.1520543038 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
20 Hb_000116_470 0.1523537153 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]

Gene co-expression network

sample Hb_002609_220 Hb_002609_220 Hb_005532_060 Hb_005532_060 Hb_002609_220--Hb_005532_060 Hb_004324_370 Hb_004324_370 Hb_002609_220--Hb_004324_370 Hb_000223_150 Hb_000223_150 Hb_002609_220--Hb_000223_150 Hb_006501_040 Hb_006501_040 Hb_002609_220--Hb_006501_040 Hb_001009_310 Hb_001009_310 Hb_002609_220--Hb_001009_310 Hb_178968_110 Hb_178968_110 Hb_002609_220--Hb_178968_110 Hb_000457_150 Hb_000457_150 Hb_005532_060--Hb_000457_150 Hb_005532_060--Hb_178968_110 Hb_055062_030 Hb_055062_030 Hb_005532_060--Hb_055062_030 Hb_003266_130 Hb_003266_130 Hb_005532_060--Hb_003266_130 Hb_005532_060--Hb_000223_150 Hb_005488_010 Hb_005488_010 Hb_005532_060--Hb_005488_010 Hb_000193_290 Hb_000193_290 Hb_004324_370--Hb_000193_290 Hb_004324_370--Hb_055062_030 Hb_004324_370--Hb_000457_150 Hb_006949_050 Hb_006949_050 Hb_004324_370--Hb_006949_050 Hb_000554_020 Hb_000554_020 Hb_004324_370--Hb_000554_020 Hb_002399_010 Hb_002399_010 Hb_004324_370--Hb_002399_010 Hb_000223_150--Hb_005488_010 Hb_008289_060 Hb_008289_060 Hb_000223_150--Hb_008289_060 Hb_006846_110 Hb_006846_110 Hb_000223_150--Hb_006846_110 Hb_004951_040 Hb_004951_040 Hb_000223_150--Hb_004951_040 Hb_131864_040 Hb_131864_040 Hb_000223_150--Hb_131864_040 Hb_000179_210 Hb_000179_210 Hb_006501_040--Hb_000179_210 Hb_000059_220 Hb_000059_220 Hb_006501_040--Hb_000059_220 Hb_006501_040--Hb_178968_110 Hb_006501_040--Hb_003266_130 Hb_000297_200 Hb_000297_200 Hb_006501_040--Hb_000297_200 Hb_006501_040--Hb_000457_150 Hb_000022_250 Hb_000022_250 Hb_001009_310--Hb_000022_250 Hb_002783_260 Hb_002783_260 Hb_001009_310--Hb_002783_260 Hb_085781_010 Hb_085781_010 Hb_001009_310--Hb_085781_010 Hb_007951_050 Hb_007951_050 Hb_001009_310--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001009_310--Hb_000776_110 Hb_010172_050 Hb_010172_050 Hb_001009_310--Hb_010172_050 Hb_178968_110--Hb_003266_130 Hb_178968_110--Hb_000457_150 Hb_178968_110--Hb_000179_210 Hb_000614_230 Hb_000614_230 Hb_178968_110--Hb_000614_230 Hb_178968_110--Hb_010172_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0766667 0.0425292 0.00454794 0.00457215 0.0484114 0.0666202
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0836097 0.0877268 0.104949 0.0130452 0.0468252

CAGE analysis