Hb_001009_310

Information

Type -
Description -
Location Contig1009: 196370-197894
Sequence    

Annotation

kegg
ID rcu:RCOM_1507390
description coproporphyrinigen III oxidase, putative (EC:1.3.99.22)
nr
ID XP_012079907.1
description PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
swissprot
ID P73245
description Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1917 PE=2 SV=1
trembl
ID A0A067KFD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11351 PE=4 SV=1
Gene Ontology
ID GO:0016627
description radical s-adenosyl methionine domain-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00546: 194876-195577 , PASA_asmbl_00547: 196147-196431 , PASA_asmbl_00548: 197575-197951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_310 0.0 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
2 Hb_000022_250 0.0960052812 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
3 Hb_002783_260 0.0993541405 - - hypothetical protein JCGZ_08219 [Jatropha curcas]
4 Hb_085781_010 0.1033666301 - - PREDICTED: protein root UVB sensitive 4 [Jatropha curcas]
5 Hb_007951_050 0.1066055606 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000776_110 0.1110092576 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
7 Hb_010172_050 0.1124965802 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
8 Hb_000421_260 0.1128531344 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
9 Hb_178968_110 0.1131312834 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
10 Hb_002027_250 0.1155081368 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001159_100 0.1155125806 - - PREDICTED: pentatricopeptide repeat-containing protein At4g22760 [Jatropha curcas]
12 Hb_011316_050 0.1160889481 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
13 Hb_001245_070 0.1194265638 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
14 Hb_005883_030 0.1194540836 transcription factor TF Family: MYB-related PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
15 Hb_000453_170 0.1216561643 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_011571_010 0.1223087402 - - Metal tolerance protein C4, putative [Ricinus communis]
17 Hb_002810_020 0.1223717319 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]
18 Hb_001545_120 0.1223810859 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
19 Hb_000977_070 0.1225597856 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
20 Hb_007632_220 0.122657051 - - RNA-binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001009_310 Hb_001009_310 Hb_000022_250 Hb_000022_250 Hb_001009_310--Hb_000022_250 Hb_002783_260 Hb_002783_260 Hb_001009_310--Hb_002783_260 Hb_085781_010 Hb_085781_010 Hb_001009_310--Hb_085781_010 Hb_007951_050 Hb_007951_050 Hb_001009_310--Hb_007951_050 Hb_000776_110 Hb_000776_110 Hb_001009_310--Hb_000776_110 Hb_010172_050 Hb_010172_050 Hb_001009_310--Hb_010172_050 Hb_002810_020 Hb_002810_020 Hb_000022_250--Hb_002810_020 Hb_000022_250--Hb_007951_050 Hb_000554_020 Hb_000554_020 Hb_000022_250--Hb_000554_020 Hb_001159_100 Hb_001159_100 Hb_000022_250--Hb_001159_100 Hb_000022_250--Hb_010172_050 Hb_001488_330 Hb_001488_330 Hb_000022_250--Hb_001488_330 Hb_011673_030 Hb_011673_030 Hb_002783_260--Hb_011673_030 Hb_001507_020 Hb_001507_020 Hb_002783_260--Hb_001507_020 Hb_000538_200 Hb_000538_200 Hb_002783_260--Hb_000538_200 Hb_003938_080 Hb_003938_080 Hb_002783_260--Hb_003938_080 Hb_001245_070 Hb_001245_070 Hb_002783_260--Hb_001245_070 Hb_001736_040 Hb_001736_040 Hb_002783_260--Hb_001736_040 Hb_000796_220 Hb_000796_220 Hb_085781_010--Hb_000796_220 Hb_012799_180 Hb_012799_180 Hb_085781_010--Hb_012799_180 Hb_007632_220 Hb_007632_220 Hb_085781_010--Hb_007632_220 Hb_085781_010--Hb_007951_050 Hb_009048_040 Hb_009048_040 Hb_085781_010--Hb_009048_040 Hb_085781_010--Hb_011673_030 Hb_000421_260 Hb_000421_260 Hb_007951_050--Hb_000421_260 Hb_000754_060 Hb_000754_060 Hb_007951_050--Hb_000754_060 Hb_002496_030 Hb_002496_030 Hb_007951_050--Hb_002496_030 Hb_007951_050--Hb_001159_100 Hb_015306_020 Hb_015306_020 Hb_007951_050--Hb_015306_020 Hb_028872_140 Hb_028872_140 Hb_007951_050--Hb_028872_140 Hb_001269_550 Hb_001269_550 Hb_000776_110--Hb_001269_550 Hb_000152_820 Hb_000152_820 Hb_000776_110--Hb_000152_820 Hb_000776_110--Hb_001159_100 Hb_001975_160 Hb_001975_160 Hb_000776_110--Hb_001975_160 Hb_002039_010 Hb_002039_010 Hb_000776_110--Hb_002039_010 Hb_000317_020 Hb_000317_020 Hb_000776_110--Hb_000317_020 Hb_016901_010 Hb_016901_010 Hb_010172_050--Hb_016901_010 Hb_002518_140 Hb_002518_140 Hb_010172_050--Hb_002518_140 Hb_003266_130 Hb_003266_130 Hb_010172_050--Hb_003266_130 Hb_178968_110 Hb_178968_110 Hb_010172_050--Hb_178968_110 Hb_000063_140 Hb_000063_140 Hb_010172_050--Hb_000063_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76796 0.920249 0.557976 0.113325 1.41319 1.88712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.12629 1.82919 2.24312 0.594398 1.12936

CAGE analysis