Hb_003502_070

Information

Type -
Description -
Location Contig3502: 69269-69770
Sequence    

Annotation

kegg
ID sot:102596895
description probable LRR receptor-like serine/threonine-protein kinase At3g47570-like
nr
ID KDO40018.1
description hypothetical protein CISIN_1g0405401mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DAY3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0405401mg PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36476: 69118-69542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003502_070 0.0 - - hypothetical protein CISIN_1g0405401mg, partial [Citrus sinensis]
2 Hb_006573_290 0.1416713944 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
3 Hb_000975_230 0.1638626132 - - hypothetical protein ZEAMMB73_864543 [Zea mays]
4 Hb_000946_100 0.1683294035 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
5 Hb_000377_150 0.1700219256 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
6 Hb_002154_110 0.1740450468 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
7 Hb_000016_170 0.1755701021 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005167_030 0.1765513898 - - PREDICTED: serine/threonine-protein kinase At5g01020-like, partial [Camelina sativa]
9 Hb_000056_250 0.1769752157 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein 3 [Jatropha curcas]
10 Hb_003291_020 0.1774690474 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
11 Hb_000705_290 0.1793627268 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
12 Hb_148209_010 0.1805729364 - - RAS-related GTP-binding family protein [Populus trichocarpa]
13 Hb_002157_040 0.1829854397 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
14 Hb_000649_140 0.1838975161 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
15 Hb_000056_070 0.1840585458 - - -
16 Hb_000049_050 0.1842982649 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
17 Hb_161175_010 0.1860613872 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
18 Hb_000292_060 0.1866658191 - - transporter, putative [Ricinus communis]
19 Hb_008206_100 0.1869564047 - - PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas]
20 Hb_005496_090 0.1872157067 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003502_070 Hb_003502_070 Hb_006573_290 Hb_006573_290 Hb_003502_070--Hb_006573_290 Hb_000975_230 Hb_000975_230 Hb_003502_070--Hb_000975_230 Hb_000946_100 Hb_000946_100 Hb_003502_070--Hb_000946_100 Hb_000377_150 Hb_000377_150 Hb_003502_070--Hb_000377_150 Hb_002154_110 Hb_002154_110 Hb_003502_070--Hb_002154_110 Hb_000016_170 Hb_000016_170 Hb_003502_070--Hb_000016_170 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_148209_010 Hb_148209_010 Hb_006573_290--Hb_148209_010 Hb_021409_080 Hb_021409_080 Hb_006573_290--Hb_021409_080 Hb_006573_290--Hb_002154_110 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_006573_290--Hb_000946_100 Hb_000445_490 Hb_000445_490 Hb_000975_230--Hb_000445_490 Hb_003777_040 Hb_003777_040 Hb_000975_230--Hb_003777_040 Hb_000049_050 Hb_000049_050 Hb_000975_230--Hb_000049_050 Hb_000030_200 Hb_000030_200 Hb_000975_230--Hb_000030_200 Hb_000260_790 Hb_000260_790 Hb_000975_230--Hb_000260_790 Hb_000834_030 Hb_000834_030 Hb_000975_230--Hb_000834_030 Hb_000946_100--Hb_000016_170 Hb_002876_020 Hb_002876_020 Hb_000946_100--Hb_002876_020 Hb_000946_100--Hb_002154_110 Hb_002677_020 Hb_002677_020 Hb_000946_100--Hb_002677_020 Hb_005496_090 Hb_005496_090 Hb_000946_100--Hb_005496_090 Hb_000457_290 Hb_000457_290 Hb_000377_150--Hb_000457_290 Hb_002503_020 Hb_002503_020 Hb_000377_150--Hb_002503_020 Hb_000377_150--Hb_000428_060 Hb_000615_050 Hb_000615_050 Hb_000377_150--Hb_000615_050 Hb_001153_120 Hb_001153_120 Hb_000377_150--Hb_001153_120 Hb_161175_010 Hb_161175_010 Hb_000377_150--Hb_161175_010 Hb_003103_010 Hb_003103_010 Hb_002154_110--Hb_003103_010 Hb_008642_030 Hb_008642_030 Hb_002154_110--Hb_008642_030 Hb_002154_110--Hb_000016_170 Hb_000563_200 Hb_000563_200 Hb_002154_110--Hb_000563_200 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_005167_030 Hb_005167_030 Hb_000016_170--Hb_005167_030 Hb_003880_040 Hb_003880_040 Hb_000016_170--Hb_003880_040 Hb_000016_170--Hb_005496_090 Hb_000016_170--Hb_008642_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.130237 0.435344 0.909328 2.69527 0 0.799805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.10687 2.9325 2.16548 0.779663 1.96706

CAGE analysis