Hb_002685_050

Information

Type transcription factor
Description TF Family: LUG
Location Contig2685: 47169-56574
Sequence    

Annotation

kegg
ID rcu:RCOM_1674120
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_012091622.1
description PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
swissprot
ID Q9FUY2
description Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2
trembl
ID B9RBC4
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_1674120 PE=4 SV=1
Gene Ontology
ID GO:0008152
description transcriptional corepressor leunig-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27950: 46921-47188
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002685_050 0.0 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
2 Hb_003638_060 0.3023662439 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
3 Hb_002097_220 0.3084420271 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Sesamum indicum]
4 Hb_001818_030 0.3097574766 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
5 Hb_012092_020 0.3194230871 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
6 Hb_002999_040 0.320501547 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000010_450 0.3286317249 - - purine permease, putative [Ricinus communis]
8 Hb_003581_180 0.3307760513 - - Pectate lyase precursor, putative [Ricinus communis]
9 Hb_000051_080 0.3349738731 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT3 [Jatropha curcas]
10 Hb_000009_370 0.3374743559 - - hypothetical protein JCGZ_12284 [Jatropha curcas]
11 Hb_028621_030 0.3375283149 - - PREDICTED: serine/threonine-protein kinase AGC1-7 [Jatropha curcas]
12 Hb_004228_060 0.3403392392 - - Tubulin beta-2 chain [Triticum urartu]
13 Hb_000878_140 0.3527468004 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
14 Hb_014430_010 0.358018645 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
15 Hb_004324_230 0.3605105917 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
16 Hb_005725_150 0.36806196 - - PREDICTED: kinesin-related protein 11 isoform X1 [Jatropha curcas]
17 Hb_056196_040 0.3687527272 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001890_020 0.3721014774 - - hypothetical protein CICLE_v10025198mg [Citrus clementina]
19 Hb_052764_040 0.3770397674 - - syntaxin 125 family protein [Populus trichocarpa]
20 Hb_089889_010 0.3864120041 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002685_050 Hb_002685_050 Hb_003638_060 Hb_003638_060 Hb_002685_050--Hb_003638_060 Hb_002097_220 Hb_002097_220 Hb_002685_050--Hb_002097_220 Hb_001818_030 Hb_001818_030 Hb_002685_050--Hb_001818_030 Hb_012092_020 Hb_012092_020 Hb_002685_050--Hb_012092_020 Hb_002999_040 Hb_002999_040 Hb_002685_050--Hb_002999_040 Hb_000010_450 Hb_000010_450 Hb_002685_050--Hb_000010_450 Hb_004324_230 Hb_004324_230 Hb_003638_060--Hb_004324_230 Hb_003638_060--Hb_000010_450 Hb_010916_010 Hb_010916_010 Hb_003638_060--Hb_010916_010 Hb_000592_120 Hb_000592_120 Hb_003638_060--Hb_000592_120 Hb_004228_060 Hb_004228_060 Hb_003638_060--Hb_004228_060 Hb_078641_020 Hb_078641_020 Hb_003638_060--Hb_078641_020 Hb_133279_010 Hb_133279_010 Hb_002097_220--Hb_133279_010 Hb_002097_220--Hb_012092_020 Hb_002228_080 Hb_002228_080 Hb_002097_220--Hb_002228_080 Hb_001377_430 Hb_001377_430 Hb_002097_220--Hb_001377_430 Hb_180924_010 Hb_180924_010 Hb_002097_220--Hb_180924_010 Hb_001818_030--Hb_002999_040 Hb_003581_180 Hb_003581_180 Hb_001818_030--Hb_003581_180 Hb_000856_160 Hb_000856_160 Hb_001818_030--Hb_000856_160 Hb_000925_040 Hb_000925_040 Hb_001818_030--Hb_000925_040 Hb_152362_010 Hb_152362_010 Hb_001818_030--Hb_152362_010 Hb_015475_010 Hb_015475_010 Hb_001818_030--Hb_015475_010 Hb_003164_010 Hb_003164_010 Hb_012092_020--Hb_003164_010 Hb_000243_230 Hb_000243_230 Hb_012092_020--Hb_000243_230 Hb_000856_270 Hb_000856_270 Hb_012092_020--Hb_000856_270 Hb_004007_140 Hb_004007_140 Hb_012092_020--Hb_004007_140 Hb_001491_020 Hb_001491_020 Hb_012092_020--Hb_001491_020 Hb_000071_060 Hb_000071_060 Hb_012092_020--Hb_000071_060 Hb_002999_040--Hb_003581_180 Hb_002999_040--Hb_000856_160 Hb_002999_040--Hb_152362_010 Hb_002999_040--Hb_000925_040 Hb_003659_020 Hb_003659_020 Hb_002999_040--Hb_003659_020 Hb_000010_450--Hb_004324_230 Hb_000010_450--Hb_004228_060 Hb_000010_450--Hb_000592_120 Hb_003605_140 Hb_003605_140 Hb_000010_450--Hb_003605_140 Hb_000010_450--Hb_078641_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0892719 0.0146475 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0224811 0 0.0335467 0 0

CAGE analysis