Hb_002486_070

Information

Type transcription factor
Description TF Family: LOB
Location Contig2486: 65377-66069
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07280g
description POPTRDRAFT_720235; hypothetical protein
nr
ID XP_002311246.2
description hypothetical protein POPTR_0008s07280g [Populus trichocarpa]
swissprot
ID Q8LBW3
description LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2
trembl
ID B9HHU9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s07280g PE=4 SV=2
Gene Ontology
ID GO:0004088
description lob domain-containing protein 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002486_070 0.0 transcription factor TF Family: LOB hypothetical protein POPTR_0008s07280g [Populus trichocarpa]
2 Hb_075497_010 0.2232107816 - - hypothetical protein JCGZ_18511 [Jatropha curcas]
3 Hb_049677_010 0.233785242 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_000161_230 0.2520162318 - - lactoylglutathione lyase, putative [Ricinus communis]
5 Hb_009771_070 0.2548057981 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
6 Hb_011930_170 0.2555181164 - - glutathione s-transferase, putative [Ricinus communis]
7 Hb_000187_110 0.257461503 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]
8 Hb_010598_010 0.2677640319 - - PREDICTED: ankyrin-1-like [Jatropha curcas]
9 Hb_001158_110 0.2691867699 - - PREDICTED: uncharacterized protein LOC105648901 [Jatropha curcas]
10 Hb_000544_130 0.2711252895 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
11 Hb_002437_010 0.2727524566 - - PREDICTED: uncharacterized protein LOC105123193 [Populus euphratica]
12 Hb_001633_120 0.2742578066 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
13 Hb_000086_720 0.2748431619 - - leucoanthocyanidin dioxygenase, putative [Ricinus communis]
14 Hb_001002_090 0.2772145496 - - PREDICTED: receptor protein kinase-like protein At4g34220 [Jatropha curcas]
15 Hb_000979_080 0.2776803407 - - PREDICTED: 21 kDa protein-like [Jatropha curcas]
16 Hb_000993_020 0.2785660423 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
17 Hb_003768_110 0.2795435109 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
18 Hb_001691_220 0.2818310059 - - PREDICTED: uncharacterized protein LOC105649537 [Jatropha curcas]
19 Hb_031336_020 0.2821474425 - - conserved hypothetical protein [Ricinus communis]
20 Hb_021888_010 0.2822144845 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002486_070 Hb_002486_070 Hb_075497_010 Hb_075497_010 Hb_002486_070--Hb_075497_010 Hb_049677_010 Hb_049677_010 Hb_002486_070--Hb_049677_010 Hb_000161_230 Hb_000161_230 Hb_002486_070--Hb_000161_230 Hb_009771_070 Hb_009771_070 Hb_002486_070--Hb_009771_070 Hb_011930_170 Hb_011930_170 Hb_002486_070--Hb_011930_170 Hb_000187_110 Hb_000187_110 Hb_002486_070--Hb_000187_110 Hb_001114_120 Hb_001114_120 Hb_075497_010--Hb_001114_120 Hb_002003_010 Hb_002003_010 Hb_075497_010--Hb_002003_010 Hb_003086_010 Hb_003086_010 Hb_075497_010--Hb_003086_010 Hb_172426_050 Hb_172426_050 Hb_075497_010--Hb_172426_050 Hb_000317_230 Hb_000317_230 Hb_075497_010--Hb_000317_230 Hb_000005_230 Hb_000005_230 Hb_075497_010--Hb_000005_230 Hb_049677_010--Hb_009771_070 Hb_003064_010 Hb_003064_010 Hb_049677_010--Hb_003064_010 Hb_000194_080 Hb_000194_080 Hb_049677_010--Hb_000194_080 Hb_004055_080 Hb_004055_080 Hb_049677_010--Hb_004055_080 Hb_000029_420 Hb_000029_420 Hb_049677_010--Hb_000029_420 Hb_001473_100 Hb_001473_100 Hb_049677_010--Hb_001473_100 Hb_000161_230--Hb_000187_110 Hb_000544_130 Hb_000544_130 Hb_000161_230--Hb_000544_130 Hb_001633_120 Hb_001633_120 Hb_000161_230--Hb_001633_120 Hb_003226_050 Hb_003226_050 Hb_000161_230--Hb_003226_050 Hb_001158_110 Hb_001158_110 Hb_000161_230--Hb_001158_110 Hb_003020_340 Hb_003020_340 Hb_000161_230--Hb_003020_340 Hb_000402_220 Hb_000402_220 Hb_009771_070--Hb_000402_220 Hb_004324_200 Hb_004324_200 Hb_009771_070--Hb_004324_200 Hb_009771_070--Hb_003064_010 Hb_031336_020 Hb_031336_020 Hb_009771_070--Hb_031336_020 Hb_009771_070--Hb_001473_100 Hb_006152_040 Hb_006152_040 Hb_011930_170--Hb_006152_040 Hb_001691_220 Hb_001691_220 Hb_011930_170--Hb_001691_220 Hb_000958_040 Hb_000958_040 Hb_011930_170--Hb_000958_040 Hb_002701_160 Hb_002701_160 Hb_011930_170--Hb_002701_160 Hb_001579_290 Hb_001579_290 Hb_011930_170--Hb_001579_290 Hb_005357_180 Hb_005357_180 Hb_011930_170--Hb_005357_180 Hb_000979_080 Hb_000979_080 Hb_000187_110--Hb_000979_080 Hb_001002_090 Hb_001002_090 Hb_000187_110--Hb_001002_090 Hb_000187_110--Hb_003226_050 Hb_055440_010 Hb_055440_010 Hb_000187_110--Hb_055440_010 Hb_000187_110--Hb_001633_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0521308 0.240242 0.286298 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.142145 0 0 0.465783 0

CAGE analysis