Hb_002400_460

Information

Type -
Description -
Location Contig2400: 319303-323211
Sequence    

Annotation

kegg
ID rcu:RCOM_0922760
description heat shock protein 70 (HSP70)-interacting protein, putative
nr
ID XP_012076494.1
description PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
swissprot
ID Q3ZBR5
description Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1
trembl
ID B9RP02
description Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis GN=RCOM_0922760 PE=4 SV=1
Gene Ontology
ID GO:0005509
description heat shock protein 70 -interacting

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25203: 319423-323472
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002400_460 0.0 - - PREDICTED: uncharacterized protein LOC105637599 isoform X2 [Jatropha curcas]
2 Hb_024074_040 0.0817443971 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_000061_240 0.0878421413 - - kinase, putative [Ricinus communis]
4 Hb_000174_270 0.1003674887 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X1 [Jatropha curcas]
5 Hb_000291_150 0.1017410415 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
6 Hb_004725_050 0.1020367026 - - Rhomboid protein, putative [Ricinus communis]
7 Hb_000037_190 0.1025341695 - - PREDICTED: uncharacterized protein LOC105641500 [Jatropha curcas]
8 Hb_006637_020 0.1063658395 - - PREDICTED: uncharacterized protein LOC105642234 [Jatropha curcas]
9 Hb_001799_180 0.1066544435 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
10 Hb_005706_040 0.1066556462 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
11 Hb_000757_100 0.1067714366 - - SPla/RYanodine receptor domain-containing protein isoform 2 [Theobroma cacao]
12 Hb_001109_060 0.1070328961 - - amino acid transporter, putative [Ricinus communis]
13 Hb_007943_110 0.107736229 - - PREDICTED: basic salivary proline-rich protein 3 [Jatropha curcas]
14 Hb_001674_030 0.1087329983 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
15 Hb_031042_050 0.1090720033 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
16 Hb_000363_240 0.1095942652 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
17 Hb_017966_020 0.111095525 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial [Jatropha curcas]
18 Hb_002234_170 0.1125591408 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
19 Hb_000120_130 0.1131154691 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
20 Hb_003168_110 0.1131521671 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_002400_460 Hb_002400_460 Hb_024074_040 Hb_024074_040 Hb_002400_460--Hb_024074_040 Hb_000061_240 Hb_000061_240 Hb_002400_460--Hb_000061_240 Hb_000174_270 Hb_000174_270 Hb_002400_460--Hb_000174_270 Hb_000291_150 Hb_000291_150 Hb_002400_460--Hb_000291_150 Hb_004725_050 Hb_004725_050 Hb_002400_460--Hb_004725_050 Hb_000037_190 Hb_000037_190 Hb_002400_460--Hb_000037_190 Hb_000757_100 Hb_000757_100 Hb_024074_040--Hb_000757_100 Hb_006637_020 Hb_006637_020 Hb_024074_040--Hb_006637_020 Hb_026228_020 Hb_026228_020 Hb_024074_040--Hb_026228_020 Hb_004410_050 Hb_004410_050 Hb_024074_040--Hb_004410_050 Hb_000260_600 Hb_000260_600 Hb_024074_040--Hb_000260_600 Hb_030827_020 Hb_030827_020 Hb_000061_240--Hb_030827_020 Hb_000120_130 Hb_000120_130 Hb_000061_240--Hb_000120_130 Hb_002267_140 Hb_002267_140 Hb_000061_240--Hb_002267_140 Hb_000479_220 Hb_000479_220 Hb_000061_240--Hb_000479_220 Hb_138596_010 Hb_138596_010 Hb_000061_240--Hb_138596_010 Hb_003494_020 Hb_003494_020 Hb_000174_270--Hb_003494_020 Hb_001999_290 Hb_001999_290 Hb_000174_270--Hb_001999_290 Hb_000028_130 Hb_000028_130 Hb_000174_270--Hb_000028_130 Hb_062226_070 Hb_062226_070 Hb_000174_270--Hb_062226_070 Hb_000174_270--Hb_000037_190 Hb_001635_120 Hb_001635_120 Hb_000174_270--Hb_001635_120 Hb_034585_010 Hb_034585_010 Hb_000291_150--Hb_034585_010 Hb_003617_020 Hb_003617_020 Hb_000291_150--Hb_003617_020 Hb_001329_250 Hb_001329_250 Hb_000291_150--Hb_001329_250 Hb_001440_020 Hb_001440_020 Hb_000291_150--Hb_001440_020 Hb_000291_150--Hb_004725_050 Hb_002289_060 Hb_002289_060 Hb_000291_150--Hb_002289_060 Hb_004725_050--Hb_003617_020 Hb_000172_100 Hb_000172_100 Hb_004725_050--Hb_000172_100 Hb_001357_040 Hb_001357_040 Hb_004725_050--Hb_001357_040 Hb_003544_110 Hb_003544_110 Hb_004725_050--Hb_003544_110 Hb_005706_040 Hb_005706_040 Hb_004725_050--Hb_005706_040 Hb_003504_030 Hb_003504_030 Hb_000037_190--Hb_003504_030 Hb_002732_040 Hb_002732_040 Hb_000037_190--Hb_002732_040 Hb_001329_140 Hb_001329_140 Hb_000037_190--Hb_001329_140 Hb_003168_110 Hb_003168_110 Hb_000037_190--Hb_003168_110 Hb_000866_460 Hb_000866_460 Hb_000037_190--Hb_000866_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.5153 21.6448 7.3481 20.672 13.2917 20.4599
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.5834 9.77894 14.9975 6.99544 19.939

CAGE analysis