Hb_002374_350

Information

Type -
Description -
Location Contig2374: 328331-334753
Sequence    

Annotation

kegg
ID rcu:RCOM_1030560
description porphobilinogen synthase, putative (EC:4.2.1.24)
nr
ID XP_011027511.1
description PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
swissprot
ID Q9SFH9
description Delta-aminolevulinic acid dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=HEMB1 PE=2 SV=1
trembl
ID B9RJ27
description Delta-aminolevulinic acid dehydratase OS=Ricinus communis GN=RCOM_1030560 PE=3 SV=1
Gene Ontology
ID GO:0009570
description delta-aminolevulinic acid chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24898: 328336-334810
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_350 0.0 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
2 Hb_000333_100 0.0862452599 - - PREDICTED: tubulin--tyrosine ligase-like protein 12 isoform X1 [Jatropha curcas]
3 Hb_004225_130 0.0938197265 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105628060 isoform X1 [Jatropha curcas]
4 Hb_004037_030 0.0991863619 - - PREDICTED: DNA repair endonuclease UVH1 isoform X2 [Jatropha curcas]
5 Hb_000160_220 0.1008378046 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
6 Hb_002411_120 0.1031279007 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
7 Hb_056196_050 0.1040719676 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
8 Hb_004970_150 0.105280973 - - PREDICTED: uncharacterized protein LOC105633636 [Jatropha curcas]
9 Hb_005016_060 0.1061549311 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_002235_320 0.1100892583 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
11 Hb_031091_010 0.1122995961 - - crooked neck protein, putative [Ricinus communis]
12 Hb_000594_020 0.1124052989 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25 isoform X2 [Jatropha curcas]
13 Hb_000699_250 0.11248174 - - Poly(rC)-binding protein, putative [Ricinus communis]
14 Hb_019813_010 0.1133110891 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
15 Hb_012180_050 0.1137991115 - - PREDICTED: uncharacterized protein LOC105632355 isoform X3 [Jatropha curcas]
16 Hb_001059_100 0.1143776317 - - PREDICTED: heterogeneous nuclear ribonucleoprotein U-like protein 1 [Jatropha curcas]
17 Hb_000088_020 0.1146278423 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
18 Hb_002960_160 0.1157757097 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
19 Hb_002477_150 0.1158282851 transcription factor TF Family: Alfin-like DNA binding protein, putative [Ricinus communis]
20 Hb_001301_230 0.1167713141 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_350 Hb_002374_350 Hb_000333_100 Hb_000333_100 Hb_002374_350--Hb_000333_100 Hb_004225_130 Hb_004225_130 Hb_002374_350--Hb_004225_130 Hb_004037_030 Hb_004037_030 Hb_002374_350--Hb_004037_030 Hb_000160_220 Hb_000160_220 Hb_002374_350--Hb_000160_220 Hb_002411_120 Hb_002411_120 Hb_002374_350--Hb_002411_120 Hb_056196_050 Hb_056196_050 Hb_002374_350--Hb_056196_050 Hb_006913_040 Hb_006913_040 Hb_000333_100--Hb_006913_040 Hb_007643_050 Hb_007643_050 Hb_000333_100--Hb_007643_050 Hb_031091_010 Hb_031091_010 Hb_000333_100--Hb_031091_010 Hb_008695_120 Hb_008695_120 Hb_000333_100--Hb_008695_120 Hb_001019_170 Hb_001019_170 Hb_000333_100--Hb_001019_170 Hb_002235_320 Hb_002235_320 Hb_004225_130--Hb_002235_320 Hb_001396_290 Hb_001396_290 Hb_004225_130--Hb_001396_290 Hb_002048_090 Hb_002048_090 Hb_004225_130--Hb_002048_090 Hb_006002_030 Hb_006002_030 Hb_004225_130--Hb_006002_030 Hb_000239_070 Hb_000239_070 Hb_004225_130--Hb_000239_070 Hb_004225_130--Hb_002411_120 Hb_007904_180 Hb_007904_180 Hb_004037_030--Hb_007904_180 Hb_000002_440 Hb_000002_440 Hb_004037_030--Hb_000002_440 Hb_000699_250 Hb_000699_250 Hb_004037_030--Hb_000699_250 Hb_000096_180 Hb_000096_180 Hb_004037_030--Hb_000096_180 Hb_004037_030--Hb_000239_070 Hb_042487_010 Hb_042487_010 Hb_004037_030--Hb_042487_010 Hb_058702_010 Hb_058702_010 Hb_000160_220--Hb_058702_010 Hb_000567_050 Hb_000567_050 Hb_000160_220--Hb_000567_050 Hb_010180_040 Hb_010180_040 Hb_000160_220--Hb_010180_040 Hb_010931_040 Hb_010931_040 Hb_000160_220--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_000160_220--Hb_187739_020 Hb_003428_070 Hb_003428_070 Hb_000160_220--Hb_003428_070 Hb_000594_020 Hb_000594_020 Hb_002411_120--Hb_000594_020 Hb_009151_020 Hb_009151_020 Hb_002411_120--Hb_009151_020 Hb_001080_270 Hb_001080_270 Hb_002411_120--Hb_001080_270 Hb_020665_030 Hb_020665_030 Hb_002411_120--Hb_020665_030 Hb_002499_070 Hb_002499_070 Hb_002411_120--Hb_002499_070 Hb_004899_070 Hb_004899_070 Hb_002411_120--Hb_004899_070 Hb_000160_290 Hb_000160_290 Hb_056196_050--Hb_000160_290 Hb_000813_100 Hb_000813_100 Hb_056196_050--Hb_000813_100 Hb_003124_130 Hb_003124_130 Hb_056196_050--Hb_003124_130 Hb_000997_030 Hb_000997_030 Hb_056196_050--Hb_000997_030 Hb_056196_050--Hb_010180_040 Hb_005494_020 Hb_005494_020 Hb_056196_050--Hb_005494_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.8956 54.4332 18.3463 14.8932 48.8678 91.324
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.9171 19.504 13.8414 17.2851 15.9581

CAGE analysis