Hb_001879_040

Information

Type -
Description -
Location Contig1879: 45455-46125
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO39465.1
description hypothetical protein CISIN_1g0033281mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067DD31
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0033281mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001879_040 0.0 - - hypothetical protein CISIN_1g0033281mg, partial [Citrus sinensis]
2 Hb_029571_010 0.1351445766 - - PREDICTED: polygalacturonase QRT3 [Jatropha curcas]
3 Hb_002248_020 0.1551014188 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X1 [Populus euphratica]
4 Hb_002989_030 0.1660493186 - - PREDICTED: protein GAST1-like [Populus euphratica]
5 Hb_000567_300 0.1729094034 - - PREDICTED: protein YLS9-like [Jatropha curcas]
6 Hb_001369_320 0.1818981868 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
7 Hb_001279_220 0.1885800434 - - protein binding protein, putative [Ricinus communis]
8 Hb_005171_060 0.1894990417 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_000484_040 0.1911252173 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
10 Hb_000057_160 0.1944087931 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
11 Hb_006533_010 0.1997838512 - - PREDICTED: metalloendoproteinase 1-like [Populus euphratica]
12 Hb_005066_060 0.1999615292 - - FAD-binding Berberine family protein, putative [Theobroma cacao]
13 Hb_012136_010 0.1999899217 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
14 Hb_119748_010 0.2012636953 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_000659_010 0.2024702503 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
16 Hb_019708_010 0.2042603809 - - -
17 Hb_005563_020 0.2043130136 transcription factor TF Family: Orphans hypothetical protein POPTR_0004s16810g, partial [Populus trichocarpa]
18 Hb_002218_040 0.2043647836 - - conserved hypothetical protein [Ricinus communis]
19 Hb_038135_010 0.2051313214 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
20 Hb_004222_010 0.2076972929 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]

Gene co-expression network

sample Hb_001879_040 Hb_001879_040 Hb_029571_010 Hb_029571_010 Hb_001879_040--Hb_029571_010 Hb_002248_020 Hb_002248_020 Hb_001879_040--Hb_002248_020 Hb_002989_030 Hb_002989_030 Hb_001879_040--Hb_002989_030 Hb_000567_300 Hb_000567_300 Hb_001879_040--Hb_000567_300 Hb_001369_320 Hb_001369_320 Hb_001879_040--Hb_001369_320 Hb_001279_220 Hb_001279_220 Hb_001879_040--Hb_001279_220 Hb_029571_010--Hb_002248_020 Hb_004055_180 Hb_004055_180 Hb_029571_010--Hb_004055_180 Hb_004774_060 Hb_004774_060 Hb_029571_010--Hb_004774_060 Hb_029571_010--Hb_001279_220 Hb_001464_010 Hb_001464_010 Hb_029571_010--Hb_001464_010 Hb_097908_010 Hb_097908_010 Hb_029571_010--Hb_097908_010 Hb_002248_020--Hb_004774_060 Hb_002248_020--Hb_001279_220 Hb_001936_030 Hb_001936_030 Hb_002248_020--Hb_001936_030 Hb_002248_020--Hb_004055_180 Hb_002218_040 Hb_002218_040 Hb_002248_020--Hb_002218_040 Hb_008775_050 Hb_008775_050 Hb_002989_030--Hb_008775_050 Hb_000500_160 Hb_000500_160 Hb_002989_030--Hb_000500_160 Hb_004162_310 Hb_004162_310 Hb_002989_030--Hb_004162_310 Hb_007320_050 Hb_007320_050 Hb_002989_030--Hb_007320_050 Hb_014749_010 Hb_014749_010 Hb_002989_030--Hb_014749_010 Hb_002659_020 Hb_002659_020 Hb_002989_030--Hb_002659_020 Hb_000061_360 Hb_000061_360 Hb_000567_300--Hb_000061_360 Hb_004881_080 Hb_004881_080 Hb_000567_300--Hb_004881_080 Hb_022815_020 Hb_022815_020 Hb_000567_300--Hb_022815_020 Hb_000659_010 Hb_000659_010 Hb_000567_300--Hb_000659_010 Hb_001172_030 Hb_001172_030 Hb_000567_300--Hb_001172_030 Hb_005550_040 Hb_005550_040 Hb_000567_300--Hb_005550_040 Hb_001454_300 Hb_001454_300 Hb_001369_320--Hb_001454_300 Hb_001369_320--Hb_001279_220 Hb_000057_160 Hb_000057_160 Hb_001369_320--Hb_000057_160 Hb_001775_050 Hb_001775_050 Hb_001369_320--Hb_001775_050 Hb_129204_050 Hb_129204_050 Hb_001369_320--Hb_129204_050 Hb_020902_020 Hb_020902_020 Hb_001369_320--Hb_020902_020 Hb_175968_010 Hb_175968_010 Hb_001279_220--Hb_175968_010 Hb_001279_220--Hb_004774_060 Hb_001279_220--Hb_001454_300 Hb_001279_220--Hb_000659_010 Hb_004712_080 Hb_004712_080 Hb_001279_220--Hb_004712_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.54363 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.758 1.36911

CAGE analysis