Hb_002989_030

Information

Type -
Description -
Location Contig2989: 73129-74703
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04300g
description POPTRDRAFT_866949; hypothetical protein
nr
ID XP_011027306.1
description PREDICTED: protein GAST1-like [Populus euphratica]
swissprot
ID P27057
description Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1
trembl
ID B9H9G0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04300g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31256: 73723-74809
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002989_030 0.0 - - PREDICTED: protein GAST1-like [Populus euphratica]
2 Hb_008775_050 0.1083732619 - - PREDICTED: probable glutathione S-transferase parC [Jatropha curcas]
3 Hb_000500_160 0.1250906779 - - hypothetical protein CISIN_1g039640mg, partial [Citrus sinensis]
4 Hb_004162_310 0.1435680748 - - tonoplast intrinsic protein, putative [Ricinus communis]
5 Hb_007320_050 0.1437535212 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
6 Hb_014749_010 0.1443336593 - - hypothetical protein JCGZ_26951 [Jatropha curcas]
7 Hb_002659_020 0.1455070283 - - PREDICTED: cytochrome P450 714C2-like [Populus euphratica]
8 Hb_009659_060 0.1458479217 - - cell wall invertase [Manihot esculenta]
9 Hb_005389_180 0.1530991466 - - PREDICTED: uncharacterized protein LOC105762407 [Gossypium raimondii]
10 Hb_000560_050 0.1535295479 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
11 Hb_000383_030 0.1537759646 - - -
12 Hb_140049_060 0.1540838089 - - PREDICTED: non-specific lipid-transfer protein-like protein At2g13820 [Jatropha curcas]
13 Hb_000905_020 0.1574053389 - - PREDICTED: cytochrome P450 93A2-like [Jatropha curcas]
14 Hb_038135_010 0.158353884 transcription factor TF Family: C2H2 Transcriptional regulator SUPERMAN, putative [Ricinus communis]
15 Hb_004324_140 0.1587138333 - - PREDICTED: uncharacterized protein LOC105648358 [Jatropha curcas]
16 Hb_184964_010 0.1590193079 - - -
17 Hb_002094_060 0.1594318045 - - -
18 Hb_005204_060 0.1599573811 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_019708_010 0.1600820779 - - -
20 Hb_002289_030 0.1637507732 - - PREDICTED: uncharacterized protein LOC103957017 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_002989_030 Hb_002989_030 Hb_008775_050 Hb_008775_050 Hb_002989_030--Hb_008775_050 Hb_000500_160 Hb_000500_160 Hb_002989_030--Hb_000500_160 Hb_004162_310 Hb_004162_310 Hb_002989_030--Hb_004162_310 Hb_007320_050 Hb_007320_050 Hb_002989_030--Hb_007320_050 Hb_014749_010 Hb_014749_010 Hb_002989_030--Hb_014749_010 Hb_002659_020 Hb_002659_020 Hb_002989_030--Hb_002659_020 Hb_008775_050--Hb_000500_160 Hb_000560_050 Hb_000560_050 Hb_008775_050--Hb_000560_050 Hb_008775_050--Hb_014749_010 Hb_038135_010 Hb_038135_010 Hb_008775_050--Hb_038135_010 Hb_008775_050--Hb_007320_050 Hb_019708_010 Hb_019708_010 Hb_008775_050--Hb_019708_010 Hb_140049_060 Hb_140049_060 Hb_000500_160--Hb_140049_060 Hb_000500_160--Hb_014749_010 Hb_000500_160--Hb_007320_050 Hb_000500_160--Hb_004162_310 Hb_000500_160--Hb_002659_020 Hb_004162_310--Hb_007320_050 Hb_004162_310--Hb_014749_010 Hb_004162_310--Hb_002659_020 Hb_009659_060 Hb_009659_060 Hb_004162_310--Hb_009659_060 Hb_004162_310--Hb_000560_050 Hb_005389_180 Hb_005389_180 Hb_004162_310--Hb_005389_180 Hb_007320_050--Hb_014749_010 Hb_007320_050--Hb_002659_020 Hb_007320_050--Hb_009659_060 Hb_007320_050--Hb_000560_050 Hb_007320_050--Hb_038135_010 Hb_014749_010--Hb_002659_020 Hb_014749_010--Hb_000560_050 Hb_014749_010--Hb_009659_060 Hb_014749_010--Hb_038135_010 Hb_002659_020--Hb_009659_060 Hb_002659_020--Hb_005389_180 Hb_000383_030 Hb_000383_030 Hb_002659_020--Hb_000383_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 27.4443 1.33356 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 75.6054 3.02886

CAGE analysis