Hb_001862_070

Information

Type -
Description -
Location Contig1862: 74605-77111
Sequence    

Annotation

kegg
ID rcu:RCOM_1155060
description hypothetical protein
nr
ID XP_002524958.1
description hypothetical protein RCOM_1155060 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SG39
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1155060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18286: 74644-74874 , PASA_asmbl_18287: 75375-75828 , PASA_asmbl_18288: 76543-76922
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001862_070 0.0 - - hypothetical protein RCOM_1155060 [Ricinus communis]
2 Hb_002540_060 0.1736748664 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
3 Hb_002603_090 0.1863971708 - - PREDICTED: GDSL esterase/lipase CPRD49-like isoform X2 [Populus euphratica]
4 Hb_027654_070 0.1954022442 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000207_140 0.1980824999 - - hypothetical protein POPTR_0019s11310g [Populus trichocarpa]
6 Hb_001343_120 0.2009514301 - - conserved hypothetical protein [Ricinus communis]
7 Hb_185494_010 0.2021932603 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_007479_010 0.2036608774 - - Root phototropism protein, putative [Ricinus communis]
9 Hb_136441_010 0.2041536063 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
10 Hb_165330_010 0.2073340481 - - BnaUnng00840D [Brassica napus]
11 Hb_002443_010 0.2109517738 - - multicopper oxidase, putative [Ricinus communis]
12 Hb_000932_110 0.2119352289 - - Root phototropism protein, putative [Ricinus communis]
13 Hb_000056_030 0.21401853 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g14390 isoform X1 [Jatropha curcas]
14 Hb_188739_010 0.2143804154 - - protein binding protein, putative [Ricinus communis]
15 Hb_081529_010 0.2156851426 - - unnamed protein product [Vitis vinifera]
16 Hb_002435_090 0.2172736602 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
17 Hb_004109_250 0.2184827381 - - unknown [Populus trichocarpa x Populus deltoides]
18 Hb_012055_080 0.219334373 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
19 Hb_000110_240 0.2200740969 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
20 Hb_000494_010 0.2217087119 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]

Gene co-expression network

sample Hb_001862_070 Hb_001862_070 Hb_002540_060 Hb_002540_060 Hb_001862_070--Hb_002540_060 Hb_002603_090 Hb_002603_090 Hb_001862_070--Hb_002603_090 Hb_027654_070 Hb_027654_070 Hb_001862_070--Hb_027654_070 Hb_000207_140 Hb_000207_140 Hb_001862_070--Hb_000207_140 Hb_001343_120 Hb_001343_120 Hb_001862_070--Hb_001343_120 Hb_185494_010 Hb_185494_010 Hb_001862_070--Hb_185494_010 Hb_000028_150 Hb_000028_150 Hb_002540_060--Hb_000028_150 Hb_002540_060--Hb_001343_120 Hb_000110_240 Hb_000110_240 Hb_002540_060--Hb_000110_240 Hb_002540_060--Hb_000207_140 Hb_007479_010 Hb_007479_010 Hb_002540_060--Hb_007479_010 Hb_002435_090 Hb_002435_090 Hb_002540_060--Hb_002435_090 Hb_002603_090--Hb_000207_140 Hb_000816_210 Hb_000816_210 Hb_002603_090--Hb_000816_210 Hb_000438_130 Hb_000438_130 Hb_002603_090--Hb_000438_130 Hb_007336_050 Hb_007336_050 Hb_002603_090--Hb_007336_050 Hb_002603_090--Hb_002435_090 Hb_002603_090--Hb_002540_060 Hb_001975_050 Hb_001975_050 Hb_027654_070--Hb_001975_050 Hb_003992_050 Hb_003992_050 Hb_027654_070--Hb_003992_050 Hb_027654_070--Hb_001343_120 Hb_027654_070--Hb_000207_140 Hb_027654_070--Hb_002540_060 Hb_027654_070--Hb_002435_090 Hb_000207_140--Hb_002435_090 Hb_188739_010 Hb_188739_010 Hb_000207_140--Hb_188739_010 Hb_000207_140--Hb_001343_120 Hb_000207_140--Hb_003992_050 Hb_000207_140--Hb_000816_210 Hb_000207_140--Hb_001975_050 Hb_000042_390 Hb_000042_390 Hb_001343_120--Hb_000042_390 Hb_001343_120--Hb_002435_090 Hb_001343_120--Hb_001975_050 Hb_004218_050 Hb_004218_050 Hb_001343_120--Hb_004218_050 Hb_002443_010 Hb_002443_010 Hb_185494_010--Hb_002443_010 Hb_185494_010--Hb_002540_060 Hb_000574_380 Hb_000574_380 Hb_185494_010--Hb_000574_380 Hb_005197_030 Hb_005197_030 Hb_185494_010--Hb_005197_030 Hb_003541_010 Hb_003541_010 Hb_185494_010--Hb_003541_010 Hb_000347_170 Hb_000347_170 Hb_185494_010--Hb_000347_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0425827 0.0587782 1.20206 0.25124 0.108209 0.0267492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0763415 0 0 0.319006

CAGE analysis