Hb_001019_220

Information

Type -
Description -
Location Contig1019: 277417-278556
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19470g
description POPTRDRAFT_831341; hypothetical protein
nr
ID XP_002305557.1
description hypothetical protein POPTR_0004s19470g [Populus trichocarpa]
swissprot
ID Q02921
description Early nodulin-93 OS=Glycine max PE=2 SV=1
trembl
ID A3FGC9
description Early nodulin 93 protein OS=Populus alba x Populus glandulosa GN=enod93 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001019_220 0.0 - - hypothetical protein POPTR_0004s19470g [Populus trichocarpa]
2 Hb_000329_160 0.1000298191 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
3 Hb_000684_060 0.1027548682 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
4 Hb_003663_030 0.1055575627 - - PREDICTED: early nodulin-93-like [Jatropha curcas]
5 Hb_005120_010 0.1079875059 - - amino acid transporter, putative [Ricinus communis]
6 Hb_148986_010 0.1134330567 - - unnamed protein product [Vitis vinifera]
7 Hb_007926_020 0.1140087457 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
8 Hb_006925_010 0.1160189806 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
9 Hb_080238_010 0.1161857987 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_002929_010 0.1181836439 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
11 Hb_003857_010 0.1192008322 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003119_110 0.1205984431 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]
13 Hb_000679_070 0.1224542668 - - hypothetical protein POPTR_0006s26840g [Populus trichocarpa]
14 Hb_009026_040 0.1227063445 - - pathogenesis-related family protein [Populus trichocarpa]
15 Hb_019392_010 0.1233007526 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
16 Hb_001142_040 0.1234058163 - - PREDICTED: protein YLS9 [Jatropha curcas]
17 Hb_002184_040 0.1243908906 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
18 Hb_004057_050 0.1299293179 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
19 Hb_001266_090 0.1313071122 - - -
20 Hb_058620_040 0.1317423174 - - Myrcene synthase, chloroplastic, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_001019_220 Hb_001019_220 Hb_000329_160 Hb_000329_160 Hb_001019_220--Hb_000329_160 Hb_000684_060 Hb_000684_060 Hb_001019_220--Hb_000684_060 Hb_003663_030 Hb_003663_030 Hb_001019_220--Hb_003663_030 Hb_005120_010 Hb_005120_010 Hb_001019_220--Hb_005120_010 Hb_148986_010 Hb_148986_010 Hb_001019_220--Hb_148986_010 Hb_007926_020 Hb_007926_020 Hb_001019_220--Hb_007926_020 Hb_006925_010 Hb_006925_010 Hb_000329_160--Hb_006925_010 Hb_004057_050 Hb_004057_050 Hb_000329_160--Hb_004057_050 Hb_019392_010 Hb_019392_010 Hb_000329_160--Hb_019392_010 Hb_000329_160--Hb_148986_010 Hb_080238_010 Hb_080238_010 Hb_000329_160--Hb_080238_010 Hb_000086_710 Hb_000086_710 Hb_000329_160--Hb_000086_710 Hb_000684_060--Hb_148986_010 Hb_000684_060--Hb_080238_010 Hb_002929_010 Hb_002929_010 Hb_000684_060--Hb_002929_010 Hb_003334_020 Hb_003334_020 Hb_000684_060--Hb_003334_020 Hb_000684_060--Hb_006925_010 Hb_000684_060--Hb_003663_030 Hb_003663_030--Hb_002929_010 Hb_001266_090 Hb_001266_090 Hb_003663_030--Hb_001266_090 Hb_000008_130 Hb_000008_130 Hb_003663_030--Hb_000008_130 Hb_000013_040 Hb_000013_040 Hb_003663_030--Hb_000013_040 Hb_000013_070 Hb_000013_070 Hb_003663_030--Hb_000013_070 Hb_005120_010--Hb_000329_160 Hb_058620_040 Hb_058620_040 Hb_005120_010--Hb_058620_040 Hb_000141_070 Hb_000141_070 Hb_005120_010--Hb_000141_070 Hb_003119_110 Hb_003119_110 Hb_005120_010--Hb_003119_110 Hb_003334_080 Hb_003334_080 Hb_005120_010--Hb_003334_080 Hb_002553_170 Hb_002553_170 Hb_005120_010--Hb_002553_170 Hb_148986_010--Hb_019392_010 Hb_148986_010--Hb_006925_010 Hb_001266_110 Hb_001266_110 Hb_148986_010--Hb_001266_110 Hb_148986_010--Hb_003334_020 Hb_148986_010--Hb_000086_710 Hb_003857_010 Hb_003857_010 Hb_007926_020--Hb_003857_010 Hb_001142_040 Hb_001142_040 Hb_007926_020--Hb_001142_040 Hb_002184_040 Hb_002184_040 Hb_007926_020--Hb_002184_040 Hb_001652_060 Hb_001652_060 Hb_007926_020--Hb_001652_060 Hb_078903_010 Hb_078903_010 Hb_007926_020--Hb_078903_010 Hb_123560_010 Hb_123560_010 Hb_007926_020--Hb_123560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.461486 0 1.60092 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.365394 0.202445 72.8626 0.223041

CAGE analysis