Hb_000523_120

Information

Type -
Description -
Location Contig523: 145716-147599
Sequence    

Annotation

kegg
ID tcc:TCM_017664
description AMP-dependent synthetase and ligase family protein
nr
ID XP_012074698.1
description PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
swissprot
ID Q9C8D4
description Butyrate--CoA ligase AAE11, peroxisomal OS=Arabidopsis thaliana GN=AAE11 PE=1 SV=1
trembl
ID A0A061EFH9
description AMP-dependent synthetase and ligase family protein OS=Theobroma cacao GN=TCM_017664 PE=4 SV=1
Gene Ontology
ID GO:0016874
description butyrate-- ligase peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46904: 146176-146297
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000523_120 0.0 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
2 Hb_000363_110 0.1632200344 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
3 Hb_000359_080 0.1651094136 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
4 Hb_098160_010 0.1734759914 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
5 Hb_000172_080 0.177313388 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
6 Hb_013607_010 0.1774632979 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
7 Hb_000473_080 0.1780186455 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
8 Hb_000649_160 0.1782503142 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
9 Hb_078901_010 0.1786978516 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
10 Hb_002053_030 0.1811451638 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
11 Hb_002234_200 0.181429021 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
12 Hb_001898_010 0.1819322334 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
13 Hb_000061_100 0.1821773678 - - hypothetical protein CISIN_1g0053742mg, partial [Citrus sinensis]
14 Hb_000776_050 0.1826883599 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
15 Hb_009476_110 0.1835448713 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
16 Hb_000245_270 0.185337062 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
17 Hb_029866_050 0.1873591135 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
18 Hb_178658_010 0.1889666448 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
19 Hb_001791_010 0.189051043 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g63710 [Jatropha curcas]
20 Hb_004166_010 0.1892879988 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]

Gene co-expression network

sample Hb_000523_120 Hb_000523_120 Hb_000363_110 Hb_000363_110 Hb_000523_120--Hb_000363_110 Hb_000359_080 Hb_000359_080 Hb_000523_120--Hb_000359_080 Hb_098160_010 Hb_098160_010 Hb_000523_120--Hb_098160_010 Hb_000172_080 Hb_000172_080 Hb_000523_120--Hb_000172_080 Hb_013607_010 Hb_013607_010 Hb_000523_120--Hb_013607_010 Hb_000473_080 Hb_000473_080 Hb_000523_120--Hb_000473_080 Hb_000397_090 Hb_000397_090 Hb_000363_110--Hb_000397_090 Hb_001345_030 Hb_001345_030 Hb_000363_110--Hb_001345_030 Hb_002234_200 Hb_002234_200 Hb_000363_110--Hb_002234_200 Hb_000363_110--Hb_013607_010 Hb_000363_110--Hb_098160_010 Hb_000003_420 Hb_000003_420 Hb_000363_110--Hb_000003_420 Hb_000359_080--Hb_000172_080 Hb_000359_080--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000359_080--Hb_029866_050 Hb_000359_080--Hb_000003_420 Hb_000103_400 Hb_000103_400 Hb_000359_080--Hb_000103_400 Hb_000359_080--Hb_000363_110 Hb_001405_060 Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_098160_010--Hb_002234_200 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_001898_010 Hb_001898_010 Hb_098160_010--Hb_001898_010 Hb_004166_010 Hb_004166_010 Hb_000172_080--Hb_004166_010 Hb_078901_010 Hb_078901_010 Hb_000172_080--Hb_078901_010 Hb_008253_040 Hb_008253_040 Hb_000172_080--Hb_008253_040 Hb_000172_080--Hb_001345_030 Hb_000172_080--Hb_098160_010 Hb_013607_010--Hb_002234_200 Hb_127400_010 Hb_127400_010 Hb_013607_010--Hb_127400_010 Hb_001568_120 Hb_001568_120 Hb_013607_010--Hb_001568_120 Hb_029238_020 Hb_029238_020 Hb_013607_010--Hb_029238_020 Hb_009510_050 Hb_009510_050 Hb_013607_010--Hb_009510_050 Hb_000473_080--Hb_000003_420 Hb_000752_020 Hb_000752_020 Hb_000473_080--Hb_000752_020 Hb_073119_010 Hb_073119_010 Hb_000473_080--Hb_073119_010 Hb_000473_080--Hb_000103_400 Hb_002272_140 Hb_002272_140 Hb_000473_080--Hb_002272_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.420691 0.103463 0.132887 0 0.0218431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0254796 0.0200472 0 0.0479072 0.0422225

CAGE analysis