Hb_000394_050

Information

Type -
Description -
Location Contig394: 55092-56780
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39459: 54215-54472 , PASA_asmbl_39460: 55095-55660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000394_050 0.0 - - -
2 Hb_002151_060 0.1677623721 - - PREDICTED: DNA-directed RNA polymerase III subunit rpc4 [Jatropha curcas]
3 Hb_000165_200 0.1810675514 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
4 Hb_000696_070 0.1884108395 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
5 Hb_001148_100 0.1906720301 - - -
6 Hb_000806_130 0.1915451717 - - Adenosine kinase 2 [Theobroma cacao]
7 Hb_004330_080 0.191853006 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
8 Hb_001119_070 0.2016643165 - - methylenetetrahydrofolate reductase, putative [Ricinus communis]
9 Hb_029510_100 0.2051867165 - - scab resistance family protein [Populus trichocarpa]
10 Hb_000152_710 0.2057324295 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
11 Hb_001014_190 0.2086168091 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
12 Hb_001459_090 0.2086353647 - - unnamed protein product [Vitis vinifera]
13 Hb_000679_040 0.2095570313 - - Cellulose synthase 1 [Theobroma cacao]
14 Hb_039074_010 0.2096376043 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_012707_010 0.2118568618 - - PREDICTED: uncharacterized protein C594.04c [Jatropha curcas]
16 Hb_007537_030 0.2123300175 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
17 Hb_000009_060 0.212930491 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1B [Jatropha curcas]
18 Hb_006351_020 0.2131216594 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
19 Hb_002781_050 0.213587022 - - cytochrome B5 isoform 1, putative [Ricinus communis]
20 Hb_002602_030 0.2137956026 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000394_050 Hb_000394_050 Hb_002151_060 Hb_002151_060 Hb_000394_050--Hb_002151_060 Hb_000165_200 Hb_000165_200 Hb_000394_050--Hb_000165_200 Hb_000696_070 Hb_000696_070 Hb_000394_050--Hb_000696_070 Hb_001148_100 Hb_001148_100 Hb_000394_050--Hb_001148_100 Hb_000806_130 Hb_000806_130 Hb_000394_050--Hb_000806_130 Hb_004330_080 Hb_004330_080 Hb_000394_050--Hb_004330_080 Hb_002151_060--Hb_000806_130 Hb_002151_060--Hb_001148_100 Hb_002151_060--Hb_000696_070 Hb_001486_350 Hb_001486_350 Hb_002151_060--Hb_001486_350 Hb_002781_050 Hb_002781_050 Hb_002151_060--Hb_002781_050 Hb_000236_190 Hb_000236_190 Hb_002151_060--Hb_000236_190 Hb_164926_040 Hb_164926_040 Hb_000165_200--Hb_164926_040 Hb_001472_110 Hb_001472_110 Hb_000165_200--Hb_001472_110 Hb_004545_070 Hb_004545_070 Hb_000165_200--Hb_004545_070 Hb_002301_110 Hb_002301_110 Hb_000165_200--Hb_002301_110 Hb_002339_030 Hb_002339_030 Hb_000165_200--Hb_002339_030 Hb_009545_030 Hb_009545_030 Hb_000165_200--Hb_009545_030 Hb_000696_070--Hb_002781_050 Hb_000696_070--Hb_000806_130 Hb_001119_070 Hb_001119_070 Hb_000696_070--Hb_001119_070 Hb_001369_630 Hb_001369_630 Hb_000696_070--Hb_001369_630 Hb_000696_070--Hb_001486_350 Hb_026527_010 Hb_026527_010 Hb_000696_070--Hb_026527_010 Hb_001148_100--Hb_002781_050 Hb_001148_100--Hb_000696_070 Hb_000175_470 Hb_000175_470 Hb_001148_100--Hb_000175_470 Hb_158092_040 Hb_158092_040 Hb_001148_100--Hb_158092_040 Hb_001148_090 Hb_001148_090 Hb_001148_100--Hb_001148_090 Hb_000806_130--Hb_001486_350 Hb_001329_180 Hb_001329_180 Hb_000806_130--Hb_001329_180 Hb_000806_130--Hb_000236_190 Hb_000806_130--Hb_001119_070 Hb_000300_420 Hb_000300_420 Hb_000806_130--Hb_000300_420 Hb_029510_100 Hb_029510_100 Hb_004330_080--Hb_029510_100 Hb_001014_190 Hb_001014_190 Hb_004330_080--Hb_001014_190 Hb_135757_020 Hb_135757_020 Hb_004330_080--Hb_135757_020 Hb_004094_020 Hb_004094_020 Hb_004330_080--Hb_004094_020 Hb_000029_440 Hb_000029_440 Hb_004330_080--Hb_000029_440 Hb_030565_110 Hb_030565_110 Hb_004330_080--Hb_030565_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100141 0.112337 0.308955 1.30578 0.124368 0.0786722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.241664 0.281355 0.760271 0.466918

CAGE analysis