Hb_000175_510

Information

Type -
Description -
Location Contig175: 360833-364275
Sequence    

Annotation

kegg
ID rcu:RCOM_0898470
description partner of sld5, putative
nr
ID XP_012073218.1
description PREDICTED: probable DNA replication complex GINS protein PSF1 [Jatropha curcas]
swissprot
ID Q9CZ15
description DNA replication complex GINS protein PSF1 OS=Mus musculus GN=Gins1 PE=2 SV=1
trembl
ID A0A067KQ34
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06169 PE=4 SV=1
Gene Ontology
ID GO:0000811
description probable dna replication complex gins protein psf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16728: 361094-363291 , PASA_asmbl_16729: 361071-363291 , PASA_asmbl_16730: 361094-363291 , PASA_asmbl_16731: 363340-364370
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_510 0.0 - - PREDICTED: probable DNA replication complex GINS protein PSF1 [Jatropha curcas]
2 Hb_047503_010 0.097042519 - - PREDICTED: putative protein N-methyltransferase YNL024C [Jatropha curcas]
3 Hb_002016_150 0.1025250147 - - PREDICTED: uncharacterized protein LOC105642512 [Jatropha curcas]
4 Hb_029388_020 0.1047749614 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012286_030 0.109333724 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
6 Hb_000175_340 0.1104711603 - - PREDICTED: uncharacterized protein LOC105634861 isoform X3 [Jatropha curcas]
7 Hb_002163_050 0.112561367 - - hypothetical protein POPTR_0014s15490g [Populus trichocarpa]
8 Hb_000622_180 0.1128603312 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
9 Hb_011519_010 0.1134099216 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
10 Hb_002600_020 0.115591947 - - unnamed protein product [Vitis vinifera]
11 Hb_001437_150 0.1166573663 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
12 Hb_000000_210 0.1175941053 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like isoform X1 [Jatropha curcas]
13 Hb_000527_060 0.1176885048 - - Protein C20orf11, putative [Ricinus communis]
14 Hb_003813_030 0.1183498352 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
15 Hb_000462_130 0.1186467437 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
16 Hb_000318_190 0.1202748136 - - hypothetical protein JCGZ_04889 [Jatropha curcas]
17 Hb_010560_020 0.1208780871 - - PREDICTED: uncharacterized protein LOC105649267 [Jatropha curcas]
18 Hb_000580_090 0.1219269685 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
19 Hb_004157_040 0.1221749386 - - Rab2 [Hevea brasiliensis]
20 Hb_000853_430 0.1225739789 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_510 Hb_000175_510 Hb_047503_010 Hb_047503_010 Hb_000175_510--Hb_047503_010 Hb_002016_150 Hb_002016_150 Hb_000175_510--Hb_002016_150 Hb_029388_020 Hb_029388_020 Hb_000175_510--Hb_029388_020 Hb_012286_030 Hb_012286_030 Hb_000175_510--Hb_012286_030 Hb_000175_340 Hb_000175_340 Hb_000175_510--Hb_000175_340 Hb_002163_050 Hb_002163_050 Hb_000175_510--Hb_002163_050 Hb_002346_020 Hb_002346_020 Hb_047503_010--Hb_002346_020 Hb_001512_060 Hb_001512_060 Hb_047503_010--Hb_001512_060 Hb_011609_100 Hb_011609_100 Hb_047503_010--Hb_011609_100 Hb_002888_030 Hb_002888_030 Hb_047503_010--Hb_002888_030 Hb_002232_440 Hb_002232_440 Hb_047503_010--Hb_002232_440 Hb_003125_200 Hb_003125_200 Hb_047503_010--Hb_003125_200 Hb_007304_120 Hb_007304_120 Hb_002016_150--Hb_007304_120 Hb_000679_010 Hb_000679_010 Hb_002016_150--Hb_000679_010 Hb_000771_120 Hb_000771_120 Hb_002016_150--Hb_000771_120 Hb_000462_130 Hb_000462_130 Hb_002016_150--Hb_000462_130 Hb_000521_320 Hb_000521_320 Hb_002016_150--Hb_000521_320 Hb_003747_200 Hb_003747_200 Hb_002016_150--Hb_003747_200 Hb_000684_380 Hb_000684_380 Hb_029388_020--Hb_000684_380 Hb_029388_020--Hb_003125_200 Hb_005365_030 Hb_005365_030 Hb_029388_020--Hb_005365_030 Hb_002995_020 Hb_002995_020 Hb_029388_020--Hb_002995_020 Hb_001691_140 Hb_001691_140 Hb_029388_020--Hb_001691_140 Hb_027472_040 Hb_027472_040 Hb_029388_020--Hb_027472_040 Hb_000527_060 Hb_000527_060 Hb_012286_030--Hb_000527_060 Hb_000580_090 Hb_000580_090 Hb_012286_030--Hb_000580_090 Hb_004109_170 Hb_004109_170 Hb_012286_030--Hb_004109_170 Hb_000676_180 Hb_000676_180 Hb_012286_030--Hb_000676_180 Hb_004116_190 Hb_004116_190 Hb_012286_030--Hb_004116_190 Hb_005846_040 Hb_005846_040 Hb_012286_030--Hb_005846_040 Hb_000403_060 Hb_000403_060 Hb_000175_340--Hb_000403_060 Hb_003813_030 Hb_003813_030 Hb_000175_340--Hb_003813_030 Hb_050514_010 Hb_050514_010 Hb_000175_340--Hb_050514_010 Hb_026889_030 Hb_026889_030 Hb_000175_340--Hb_026889_030 Hb_003728_060 Hb_003728_060 Hb_000175_340--Hb_003728_060 Hb_007044_120 Hb_007044_120 Hb_000175_340--Hb_007044_120 Hb_000260_630 Hb_000260_630 Hb_002163_050--Hb_000260_630 Hb_001863_380 Hb_001863_380 Hb_002163_050--Hb_001863_380 Hb_000049_140 Hb_000049_140 Hb_002163_050--Hb_000049_140 Hb_005144_090 Hb_005144_090 Hb_002163_050--Hb_005144_090 Hb_002600_020 Hb_002600_020 Hb_002163_050--Hb_002600_020 Hb_000270_310 Hb_000270_310 Hb_002163_050--Hb_000270_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.53859 1.23283 2.13833 1.0844 1.92643 0.646449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54143 2.56972 2.11757 0.95946 0.489826

CAGE analysis