Hb_000093_080

Information

Type -
Description -
Location Contig93: 110960-124458
Sequence    

Annotation

kegg
ID pop:POPTR_0008s09730g
description POPTRDRAFT_765848; hypothetical protein
nr
ID XP_002312290.1
description hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HIG3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s09730g PE=4 SV=1
Gene Ontology
ID GO:0005634
description histone-lysine n-methyltransferase isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62810: 111888-113617 , PASA_asmbl_62812: 117190-117688 , PASA_asmbl_62813: 118689-120286 , PASA_asmbl_62814: 123019-123727
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000093_080 0.0 - - hypothetical protein POPTR_0008s09730g [Populus trichocarpa]
2 Hb_000345_170 0.0825250983 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
3 Hb_007026_030 0.0836966636 - - rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis]
4 Hb_000977_210 0.0840851566 - - chromatin assembly factor 1, subunit A, putative [Ricinus communis]
5 Hb_108216_040 0.0848679898 - - PREDICTED: protein arginine N-methyltransferase 2 [Jatropha curcas]
6 Hb_000184_110 0.0926487821 - - hypothetical protein F383_18769 [Gossypium arboreum]
7 Hb_002174_060 0.0959317439 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
8 Hb_000100_070 0.0960666095 - - PREDICTED: pre-mRNA-splicing factor ISY1 homolog [Jatropha curcas]
9 Hb_012098_110 0.0979979581 - - Ribonuclease 3 [Gossypium arboreum]
10 Hb_005396_130 0.0981270469 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
11 Hb_000510_200 0.0994342301 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_000359_250 0.100386273 - - PREDICTED: pentatricopeptide repeat-containing protein At2g26790, mitochondrial [Vitis vinifera]
13 Hb_001599_030 0.1024820339 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
14 Hb_006915_070 0.1025756151 - - hypothetical protein CAPTEDRAFT_111329, partial [Capitella teleta]
15 Hb_000640_320 0.1026208617 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
16 Hb_004195_280 0.1030245578 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
17 Hb_003794_010 0.1032777307 - - PREDICTED: uncharacterized protein LOC105641013 [Jatropha curcas]
18 Hb_000207_310 0.1044125273 - - PREDICTED: uncharacterized protein LOC105633932 [Jatropha curcas]
19 Hb_010423_020 0.1045486849 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
20 Hb_002205_040 0.1086657662 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000093_080 Hb_000093_080 Hb_000345_170 Hb_000345_170 Hb_000093_080--Hb_000345_170 Hb_007026_030 Hb_007026_030 Hb_000093_080--Hb_007026_030 Hb_000977_210 Hb_000977_210 Hb_000093_080--Hb_000977_210 Hb_108216_040 Hb_108216_040 Hb_000093_080--Hb_108216_040 Hb_000184_110 Hb_000184_110 Hb_000093_080--Hb_000184_110 Hb_002174_060 Hb_002174_060 Hb_000093_080--Hb_002174_060 Hb_002890_020 Hb_002890_020 Hb_000345_170--Hb_002890_020 Hb_154745_010 Hb_154745_010 Hb_000345_170--Hb_154745_010 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_006915_070 Hb_006915_070 Hb_000345_170--Hb_006915_070 Hb_002527_030 Hb_002527_030 Hb_000345_170--Hb_002527_030 Hb_023386_040 Hb_023386_040 Hb_000345_170--Hb_023386_040 Hb_000794_050 Hb_000794_050 Hb_007026_030--Hb_000794_050 Hb_178968_100 Hb_178968_100 Hb_007026_030--Hb_178968_100 Hb_003044_100 Hb_003044_100 Hb_007026_030--Hb_003044_100 Hb_001575_100 Hb_001575_100 Hb_007026_030--Hb_001575_100 Hb_000368_020 Hb_000368_020 Hb_007026_030--Hb_000368_020 Hb_012098_110 Hb_012098_110 Hb_007026_030--Hb_012098_110 Hb_000977_210--Hb_000345_170 Hb_003794_010 Hb_003794_010 Hb_000977_210--Hb_003794_010 Hb_000977_210--Hb_002890_020 Hb_000510_200 Hb_000510_200 Hb_000977_210--Hb_000510_200 Hb_000977_210--Hb_006915_070 Hb_000100_070 Hb_000100_070 Hb_108216_040--Hb_000100_070 Hb_000640_320 Hb_000640_320 Hb_108216_040--Hb_000640_320 Hb_008143_030 Hb_008143_030 Hb_108216_040--Hb_008143_030 Hb_000207_310 Hb_000207_310 Hb_108216_040--Hb_000207_310 Hb_000116_180 Hb_000116_180 Hb_108216_040--Hb_000116_180 Hb_002400_180 Hb_002400_180 Hb_108216_040--Hb_002400_180 Hb_001017_040 Hb_001017_040 Hb_000184_110--Hb_001017_040 Hb_005396_130 Hb_005396_130 Hb_000184_110--Hb_005396_130 Hb_004452_100 Hb_004452_100 Hb_000184_110--Hb_004452_100 Hb_000729_050 Hb_000729_050 Hb_000184_110--Hb_000729_050 Hb_005662_030 Hb_005662_030 Hb_000184_110--Hb_005662_030 Hb_000184_110--Hb_108216_040 Hb_004195_280 Hb_004195_280 Hb_002174_060--Hb_004195_280 Hb_000179_020 Hb_000179_020 Hb_002174_060--Hb_000179_020 Hb_000364_060 Hb_000364_060 Hb_002174_060--Hb_000364_060 Hb_010423_020 Hb_010423_020 Hb_002174_060--Hb_010423_020 Hb_001866_110 Hb_001866_110 Hb_002174_060--Hb_001866_110 Hb_002174_060--Hb_000184_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.88445 2.59368 2.15576 1.09216 5.20999 7.30466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.20712 3.56629 3.30809 2.61725 4.15507

CAGE analysis