Hb_000035_340

Information

Type -
Description -
Location Contig35: 354604-358938
Sequence    

Annotation

kegg
ID rcu:RCOM_0920520
description hypothetical protein
nr
ID XP_002515398.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A6QL92
description Solute carrier family 35 member F5 OS=Bos taurus GN=SLC35F5 PE=2 SV=1
trembl
ID B9RNS9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920520 PE=4 SV=1
Gene Ontology
ID GO:0016021
description thiamine-repressible mitochondrial transport protein thi74-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36440: 359446-367919 , PASA_asmbl_36441: 359731-367919 , PASA_asmbl_36442: 359723-364551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000035_340 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_134949_010 0.1094696371 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
3 Hb_000029_330 0.122545251 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
4 Hb_000193_220 0.1232049219 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
5 Hb_006472_040 0.1274836118 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
6 Hb_004162_250 0.1277980661 - - hypothetical protein POPTR_0004s22660g [Populus trichocarpa]
7 Hb_011649_010 0.1295981258 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
8 Hb_000118_090 0.1297499318 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
9 Hb_007803_040 0.1303278965 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
10 Hb_001517_010 0.1305880304 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001266_160 0.1322447345 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
12 Hb_001377_060 0.1343814464 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
13 Hb_001195_290 0.1352144269 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
14 Hb_010721_020 0.1373682691 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
15 Hb_002835_090 0.1375217237 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
16 Hb_000898_090 0.1377225751 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
17 Hb_000317_180 0.138878589 - - PREDICTED: protein THYLAKOID FORMATION1, chloroplastic [Jatropha curcas]
18 Hb_007595_050 0.139276301 - - hypothetical chloroplast RF2 [Hevea brasiliensis]
19 Hb_004979_050 0.1421506272 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
20 Hb_005348_120 0.1423386163 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000035_340 Hb_000035_340 Hb_134949_010 Hb_134949_010 Hb_000035_340--Hb_134949_010 Hb_000029_330 Hb_000029_330 Hb_000035_340--Hb_000029_330 Hb_000193_220 Hb_000193_220 Hb_000035_340--Hb_000193_220 Hb_006472_040 Hb_006472_040 Hb_000035_340--Hb_006472_040 Hb_004162_250 Hb_004162_250 Hb_000035_340--Hb_004162_250 Hb_011649_010 Hb_011649_010 Hb_000035_340--Hb_011649_010 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_001517_010 Hb_001517_010 Hb_134949_010--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_134949_010--Hb_001195_290 Hb_134949_010--Hb_000029_330 Hb_000317_180 Hb_000317_180 Hb_134949_010--Hb_000317_180 Hb_009296_030 Hb_009296_030 Hb_134949_010--Hb_009296_030 Hb_001266_160 Hb_001266_160 Hb_000029_330--Hb_001266_160 Hb_000029_330--Hb_000317_180 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_000898_090 Hb_000898_090 Hb_000029_330--Hb_000898_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_010721_020 Hb_010721_020 Hb_000193_220--Hb_010721_020 Hb_002811_250 Hb_002811_250 Hb_000193_220--Hb_002811_250 Hb_000803_170 Hb_000803_170 Hb_000193_220--Hb_000803_170 Hb_007982_040 Hb_007982_040 Hb_000193_220--Hb_007982_040 Hb_000118_090 Hb_000118_090 Hb_000193_220--Hb_000118_090 Hb_000966_040 Hb_000966_040 Hb_000193_220--Hb_000966_040 Hb_008112_020 Hb_008112_020 Hb_006472_040--Hb_008112_020 Hb_006472_040--Hb_001195_290 Hb_000679_320 Hb_000679_320 Hb_006472_040--Hb_000679_320 Hb_169383_010 Hb_169383_010 Hb_006472_040--Hb_169383_010 Hb_006472_040--Hb_000317_180 Hb_009393_140 Hb_009393_140 Hb_006472_040--Hb_009393_140 Hb_005348_120 Hb_005348_120 Hb_004162_250--Hb_005348_120 Hb_000041_250 Hb_000041_250 Hb_004162_250--Hb_000041_250 Hb_006915_010 Hb_006915_010 Hb_004162_250--Hb_006915_010 Hb_000107_540 Hb_000107_540 Hb_004162_250--Hb_000107_540 Hb_002333_040 Hb_002333_040 Hb_004162_250--Hb_002333_040 Hb_004162_250--Hb_001517_010 Hb_011649_010--Hb_000118_090 Hb_011649_010--Hb_010721_020 Hb_011649_010--Hb_000317_180 Hb_011649_010--Hb_000193_220 Hb_071079_020 Hb_071079_020 Hb_011649_010--Hb_071079_020 Hb_000045_050 Hb_000045_050 Hb_011649_010--Hb_000045_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.254902 0.237704 2.41053 1.2633 0.134989 0.18225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.206256 0 0.130907 0.342137 5.97742

CAGE analysis