Hb_000022_230

Information

Type -
Description -
Location Contig22: 336612-340413
Sequence    

Annotation

kegg
ID rcu:RCOM_0803470
description hypothetical protein
nr
ID XP_002516593.1
description hypothetical protein RCOM_0803470 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RS74
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0803470 PE=4 SV=1
Gene Ontology
ID GO:0009987
description remodeling and spacing factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22625: 336851-337898 , PASA_asmbl_22626: 339485-339807
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000022_230 0.0 - - hypothetical protein RCOM_0803470 [Ricinus communis]
2 Hb_005463_030 0.1110979658 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
3 Hb_001205_070 0.1126876073 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
4 Hb_172632_090 0.1149880742 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
5 Hb_004800_070 0.1151407397 - - -
6 Hb_002085_110 0.1162016281 - - Protein transport protein Sec61 subunit beta, putative [Ricinus communis]
7 Hb_000061_420 0.1164577681 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
8 Hb_000696_040 0.11668147 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_018790_060 0.1168646368 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
10 Hb_027472_170 0.1187674441 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
11 Hb_010883_090 0.1234187147 - - PREDICTED: uncharacterized protein LOC105638888 isoform X1 [Jatropha curcas]
12 Hb_000291_110 0.1236154161 - - eukaryotic translation initiation factor [Hevea brasiliensis]
13 Hb_001184_110 0.1240529663 - - PREDICTED: uncharacterized protein LOC105650729 isoform X2 [Jatropha curcas]
14 Hb_000805_020 0.1248245078 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
15 Hb_003680_200 0.1249102908 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
16 Hb_000258_350 0.1252926931 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
17 Hb_000406_220 0.1264184925 - - hypothetical protein POPTR_0005s04700g [Populus trichocarpa]
18 Hb_008103_120 0.1267526062 - - hypothetical protein CISIN_1g009650mg [Citrus sinensis]
19 Hb_007590_010 0.1277759391 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_001758_100 0.1283739424 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000022_230 Hb_000022_230 Hb_005463_030 Hb_005463_030 Hb_000022_230--Hb_005463_030 Hb_001205_070 Hb_001205_070 Hb_000022_230--Hb_001205_070 Hb_172632_090 Hb_172632_090 Hb_000022_230--Hb_172632_090 Hb_004800_070 Hb_004800_070 Hb_000022_230--Hb_004800_070 Hb_002085_110 Hb_002085_110 Hb_000022_230--Hb_002085_110 Hb_000061_420 Hb_000061_420 Hb_000022_230--Hb_000061_420 Hb_000175_060 Hb_000175_060 Hb_005463_030--Hb_000175_060 Hb_001998_050 Hb_001998_050 Hb_005463_030--Hb_001998_050 Hb_001442_020 Hb_001442_020 Hb_005463_030--Hb_001442_020 Hb_007943_090 Hb_007943_090 Hb_005463_030--Hb_007943_090 Hb_000227_230 Hb_000227_230 Hb_005463_030--Hb_000227_230 Hb_005645_010 Hb_005645_010 Hb_005463_030--Hb_005645_010 Hb_018790_060 Hb_018790_060 Hb_001205_070--Hb_018790_060 Hb_002631_060 Hb_002631_060 Hb_001205_070--Hb_002631_060 Hb_001488_070 Hb_001488_070 Hb_001205_070--Hb_001488_070 Hb_003376_350 Hb_003376_350 Hb_001205_070--Hb_003376_350 Hb_000413_010 Hb_000413_010 Hb_001205_070--Hb_000413_010 Hb_001205_070--Hb_000061_420 Hb_003126_080 Hb_003126_080 Hb_172632_090--Hb_003126_080 Hb_003615_010 Hb_003615_010 Hb_172632_090--Hb_003615_010 Hb_005993_040 Hb_005993_040 Hb_172632_090--Hb_005993_040 Hb_000251_130 Hb_000251_130 Hb_172632_090--Hb_000251_130 Hb_001226_160 Hb_001226_160 Hb_172632_090--Hb_001226_160 Hb_002311_350 Hb_002311_350 Hb_172632_090--Hb_002311_350 Hb_004800_070--Hb_172632_090 Hb_004800_070--Hb_003126_080 Hb_154826_010 Hb_154826_010 Hb_004800_070--Hb_154826_010 Hb_000258_350 Hb_000258_350 Hb_004800_070--Hb_000258_350 Hb_004223_280 Hb_004223_280 Hb_004800_070--Hb_004223_280 Hb_003976_010 Hb_003976_010 Hb_004800_070--Hb_003976_010 Hb_126643_020 Hb_126643_020 Hb_002085_110--Hb_126643_020 Hb_002685_010 Hb_002685_010 Hb_002085_110--Hb_002685_010 Hb_002150_080 Hb_002150_080 Hb_002085_110--Hb_002150_080 Hb_001277_270 Hb_001277_270 Hb_002085_110--Hb_001277_270 Hb_002685_170 Hb_002685_170 Hb_002085_110--Hb_002685_170 Hb_002375_020 Hb_002375_020 Hb_002085_110--Hb_002375_020 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_000061_420--Hb_018790_060 Hb_000224_170 Hb_000224_170 Hb_000061_420--Hb_000224_170 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000926_330 Hb_000926_330 Hb_000061_420--Hb_000926_330 Hb_181235_010 Hb_181235_010 Hb_000061_420--Hb_181235_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41354 2.29629 1.16057 1.07267 2.94968 2.53051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.90689 4.68793 4.41571 2.61185 0.335152

CAGE analysis