Hb_182823_010

Information

Type -
Description -
Location Contig182823: 21-580
Sequence    

Annotation

kegg
ID rcu:RCOM_1592330
description signal peptidase I, putative (EC:3.4.21.89)
nr
ID XP_012071721.1
description PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID Q9M9Z2
description Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1
trembl
ID A0A067L1P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04335 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_182823_010 0.0 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
2 Hb_001823_080 0.1302240751 - - hypothetical protein VITISV_012142 [Vitis vinifera]
3 Hb_009815_010 0.1306784172 - - -
4 Hb_000544_170 0.2785287243 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000836_100 0.3386973247 - - conserved hypothetical protein [Ricinus communis]
6 Hb_066415_010 0.3399673456 - - -
7 Hb_005054_050 0.3549526718 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
8 Hb_111985_010 0.3557235847 - - -
9 Hb_002188_020 0.3577049668 - - unnamed protein product [Vitis vinifera]
10 Hb_003529_220 0.367611395 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00222 [Jatropha curcas]
11 Hb_002673_050 0.3699069198 - - -
12 Hb_091369_010 0.369914162 - - -
13 Hb_008473_010 0.3699211063 - - PREDICTED: laccase-14-like [Jatropha curcas]
14 Hb_000944_010 0.370140929 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_003400_030 0.3701441793 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
16 Hb_002400_450 0.3703268938 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
17 Hb_000260_190 0.3704415405 - - -
18 Hb_034667_010 0.3706684865 - - -
19 Hb_008151_030 0.3711030691 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_002374_560 0.3713249437 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH11-like [Populus euphratica]

Gene co-expression network

sample Hb_182823_010 Hb_182823_010 Hb_001823_080 Hb_001823_080 Hb_182823_010--Hb_001823_080 Hb_009815_010 Hb_009815_010 Hb_182823_010--Hb_009815_010 Hb_000544_170 Hb_000544_170 Hb_182823_010--Hb_000544_170 Hb_000836_100 Hb_000836_100 Hb_182823_010--Hb_000836_100 Hb_066415_010 Hb_066415_010 Hb_182823_010--Hb_066415_010 Hb_005054_050 Hb_005054_050 Hb_182823_010--Hb_005054_050 Hb_001823_080--Hb_009815_010 Hb_001823_080--Hb_000544_170 Hb_001823_080--Hb_066415_010 Hb_111985_010 Hb_111985_010 Hb_001823_080--Hb_111985_010 Hb_001823_080--Hb_000836_100 Hb_009815_010--Hb_066415_010 Hb_000640_180 Hb_000640_180 Hb_009815_010--Hb_000640_180 Hb_000563_580 Hb_000563_580 Hb_009815_010--Hb_000563_580 Hb_000046_530 Hb_000046_530 Hb_009815_010--Hb_000046_530 Hb_000876_010 Hb_000876_010 Hb_000544_170--Hb_000876_010 Hb_002450_130 Hb_002450_130 Hb_000544_170--Hb_002450_130 Hb_000589_230 Hb_000589_230 Hb_000544_170--Hb_000589_230 Hb_003025_060 Hb_003025_060 Hb_000544_170--Hb_003025_060 Hb_005723_070 Hb_005723_070 Hb_000544_170--Hb_005723_070 Hb_174547_010 Hb_174547_010 Hb_000836_100--Hb_174547_010 Hb_000836_100--Hb_111985_010 Hb_007889_050 Hb_007889_050 Hb_000836_100--Hb_007889_050 Hb_001506_030 Hb_001506_030 Hb_000836_100--Hb_001506_030 Hb_044653_010 Hb_044653_010 Hb_000836_100--Hb_044653_010 Hb_003438_060 Hb_003438_060 Hb_000836_100--Hb_003438_060 Hb_143629_160 Hb_143629_160 Hb_066415_010--Hb_143629_160 Hb_066415_010--Hb_000563_580 Hb_004266_010 Hb_004266_010 Hb_066415_010--Hb_004266_010 Hb_066415_010--Hb_000640_180 Hb_066415_010--Hb_000046_530 Hb_002265_030 Hb_002265_030 Hb_005054_050--Hb_002265_030 Hb_000215_260 Hb_000215_260 Hb_005054_050--Hb_000215_260 Hb_001621_160 Hb_001621_160 Hb_005054_050--Hb_001621_160 Hb_000329_420 Hb_000329_420 Hb_005054_050--Hb_000329_420 Hb_120662_010 Hb_120662_010 Hb_005054_050--Hb_120662_010 Hb_002374_560 Hb_002374_560 Hb_005054_050--Hb_002374_560
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0677279 0.109309 0.0958308
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis