Hb_000544_170

Information

Type -
Description -
Location Contig544: 264857-265753
Sequence    

Annotation

kegg
ID rcu:RCOM_0175580
description hypothetical protein
nr
ID XP_002527513.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P0C2F6
description Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana GN=At1g65750 PE=3 SV=1
trembl
ID B9SNE4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0175580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000544_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000876_010 0.224947314 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
3 Hb_002450_130 0.2488787089 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
4 Hb_000589_230 0.2541422169 - - unknown [Picea sitchensis]
5 Hb_003025_060 0.2675659593 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
6 Hb_005723_070 0.2775333331 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
7 Hb_182823_010 0.2785287243 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
8 Hb_000291_130 0.2810904546 - - -
9 Hb_005839_010 0.2825845733 - - 30S ribosomal protein s13 [Camellia sinensis]
10 Hb_000130_170 0.2855813223 - - -
11 Hb_000340_330 0.2894407879 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
12 Hb_106873_020 0.2986548335 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_000671_040 0.2995448593 - - -
14 Hb_002126_020 0.302081522 - - ferrochelatase [Medicago truncatula]
15 Hb_000683_090 0.3080332885 - - stress enhanced protein [Medicago truncatula]
16 Hb_081815_010 0.3082912044 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
17 Hb_001823_080 0.3107716706 - - hypothetical protein VITISV_012142 [Vitis vinifera]
18 Hb_163132_010 0.3111311437 - - -
19 Hb_122567_020 0.3111622219 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
20 Hb_007356_010 0.3123210321 - - CTV.19 [Citrus trifoliata]

Gene co-expression network

sample Hb_000544_170 Hb_000544_170 Hb_000876_010 Hb_000876_010 Hb_000544_170--Hb_000876_010 Hb_002450_130 Hb_002450_130 Hb_000544_170--Hb_002450_130 Hb_000589_230 Hb_000589_230 Hb_000544_170--Hb_000589_230 Hb_003025_060 Hb_003025_060 Hb_000544_170--Hb_003025_060 Hb_005723_070 Hb_005723_070 Hb_000544_170--Hb_005723_070 Hb_182823_010 Hb_182823_010 Hb_000544_170--Hb_182823_010 Hb_000876_010--Hb_005723_070 Hb_000876_010--Hb_002450_130 Hb_002972_060 Hb_002972_060 Hb_000876_010--Hb_002972_060 Hb_000876_010--Hb_003025_060 Hb_000130_170 Hb_000130_170 Hb_000876_010--Hb_000130_170 Hb_009119_010 Hb_009119_010 Hb_000876_010--Hb_009119_010 Hb_008096_020 Hb_008096_020 Hb_002450_130--Hb_008096_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_002450_130--Hb_002972_060 Hb_002450_130--Hb_005723_070 Hb_002450_130--Hb_000130_170 Hb_060054_010 Hb_060054_010 Hb_000589_230--Hb_060054_010 Hb_106873_020 Hb_106873_020 Hb_000589_230--Hb_106873_020 Hb_000589_230--Hb_003025_060 Hb_081815_010 Hb_081815_010 Hb_000589_230--Hb_081815_010 Hb_001418_060 Hb_001418_060 Hb_000589_230--Hb_001418_060 Hb_115045_010 Hb_115045_010 Hb_000589_230--Hb_115045_010 Hb_003025_060--Hb_106873_020 Hb_003025_060--Hb_005723_070 Hb_002126_020 Hb_002126_020 Hb_003025_060--Hb_002126_020 Hb_003025_060--Hb_060054_010 Hb_005723_070--Hb_000130_170 Hb_005723_070--Hb_002972_060 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_001823_080 Hb_001823_080 Hb_182823_010--Hb_001823_080 Hb_009815_010 Hb_009815_010 Hb_182823_010--Hb_009815_010 Hb_000836_100 Hb_000836_100 Hb_182823_010--Hb_000836_100 Hb_066415_010 Hb_066415_010 Hb_182823_010--Hb_066415_010 Hb_005054_050 Hb_005054_050 Hb_182823_010--Hb_005054_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.806856 0 0 8.91642 4.97911 20.1093
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis