Hb_001823_080

Information

Type -
Description -
Location Contig1823: 62644-64506
Sequence    

Annotation

kegg
ID mdm:103455798
description (S)-coclaurine N-methyltransferase-like
nr
ID CAN73667.1
description hypothetical protein VITISV_012142 [Vitis vinifera]
swissprot
ID Q5C9L6
description (S)-coclaurine N-methyltransferase OS=Thalictrum flavum subsp. glaucum PE=1 SV=1
trembl
ID A5AQ51
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012142 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001823_080 0.0 - - hypothetical protein VITISV_012142 [Vitis vinifera]
2 Hb_009815_010 0.0583816029 - - -
3 Hb_182823_010 0.1302240751 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
4 Hb_000544_170 0.3107716706 - - conserved hypothetical protein [Ricinus communis]
5 Hb_066415_010 0.3269219855 - - -
6 Hb_111985_010 0.3444870803 - - -
7 Hb_000836_100 0.3550105431 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005054_050 0.370761709 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_005928_090 0.3730796461 - - PREDICTED: magnesium transporter MRS2-I-like isoform X3 [Jatropha curcas]
10 Hb_000876_010 0.3750961331 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
11 Hb_102748_010 0.3827314915 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
12 Hb_000046_530 0.3845806449 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF086 [Jatropha curcas]
13 Hb_000640_180 0.3854049938 - - enzyme inhibitor, putative [Ricinus communis]
14 Hb_000563_580 0.3862449146 - - acyltransferase, putative [Ricinus communis]
15 Hb_030784_010 0.3897343359 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
16 Hb_000869_060 0.3931175046 - - hypothetical protein L484_003245 [Morus notabilis]
17 Hb_176082_010 0.396666843 - - PREDICTED: pirin-like protein [Jatropha curcas]
18 Hb_001205_270 0.4012237451 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
19 Hb_003025_060 0.4048356738 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
20 Hb_002188_020 0.404923114 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_001823_080 Hb_001823_080 Hb_009815_010 Hb_009815_010 Hb_001823_080--Hb_009815_010 Hb_182823_010 Hb_182823_010 Hb_001823_080--Hb_182823_010 Hb_000544_170 Hb_000544_170 Hb_001823_080--Hb_000544_170 Hb_066415_010 Hb_066415_010 Hb_001823_080--Hb_066415_010 Hb_111985_010 Hb_111985_010 Hb_001823_080--Hb_111985_010 Hb_000836_100 Hb_000836_100 Hb_001823_080--Hb_000836_100 Hb_009815_010--Hb_182823_010 Hb_009815_010--Hb_066415_010 Hb_000640_180 Hb_000640_180 Hb_009815_010--Hb_000640_180 Hb_000563_580 Hb_000563_580 Hb_009815_010--Hb_000563_580 Hb_000046_530 Hb_000046_530 Hb_009815_010--Hb_000046_530 Hb_182823_010--Hb_000544_170 Hb_182823_010--Hb_000836_100 Hb_182823_010--Hb_066415_010 Hb_005054_050 Hb_005054_050 Hb_182823_010--Hb_005054_050 Hb_000876_010 Hb_000876_010 Hb_000544_170--Hb_000876_010 Hb_002450_130 Hb_002450_130 Hb_000544_170--Hb_002450_130 Hb_000589_230 Hb_000589_230 Hb_000544_170--Hb_000589_230 Hb_003025_060 Hb_003025_060 Hb_000544_170--Hb_003025_060 Hb_005723_070 Hb_005723_070 Hb_000544_170--Hb_005723_070 Hb_143629_160 Hb_143629_160 Hb_066415_010--Hb_143629_160 Hb_066415_010--Hb_000563_580 Hb_004266_010 Hb_004266_010 Hb_066415_010--Hb_004266_010 Hb_066415_010--Hb_000640_180 Hb_066415_010--Hb_000046_530 Hb_004361_010 Hb_004361_010 Hb_111985_010--Hb_004361_010 Hb_111985_010--Hb_000836_100 Hb_176685_010 Hb_176685_010 Hb_111985_010--Hb_176685_010 Hb_174547_010 Hb_174547_010 Hb_111985_010--Hb_174547_010 Hb_003266_040 Hb_003266_040 Hb_111985_010--Hb_003266_040 Hb_000869_060 Hb_000869_060 Hb_111985_010--Hb_000869_060 Hb_000836_100--Hb_174547_010 Hb_007889_050 Hb_007889_050 Hb_000836_100--Hb_007889_050 Hb_001506_030 Hb_001506_030 Hb_000836_100--Hb_001506_030 Hb_044653_010 Hb_044653_010 Hb_000836_100--Hb_044653_010 Hb_003438_060 Hb_003438_060 Hb_000836_100--Hb_003438_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.092843 0.0834059 0.0631388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis