Hb_140616_020

Information

Type -
Description -
Location Contig140616: 25129-26417
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10999: 25817-26167
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140616_020 0.0 - - -
2 Hb_000740_070 0.1211800985 - - -
3 Hb_000617_220 0.1319499363 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
4 Hb_000107_170 0.1352505564 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
5 Hb_000359_330 0.1358144518 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007007_050 0.1388687064 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
7 Hb_010968_010 0.1395701606 - - Golgi snare 12 isoform 1 [Theobroma cacao]
8 Hb_002292_010 0.140150268 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
9 Hb_189147_010 0.1402842212 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
10 Hb_001504_150 0.1408592292 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
11 Hb_007164_020 0.1415246641 - - hypothetical protein glysoja_025872 [Glycine soja]
12 Hb_001135_020 0.1418055063 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
13 Hb_000236_280 0.1440575732 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
14 Hb_002893_020 0.1441154494 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
15 Hb_001894_030 0.1450770733 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
16 Hb_000920_280 0.1475760869 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
17 Hb_000482_110 0.1490935027 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
18 Hb_106552_050 0.1494340749 - - PREDICTED: uncharacterized protein LOC105642134 [Jatropha curcas]
19 Hb_003018_060 0.1500542944 - - PREDICTED: peptide methionine sulfoxide reductase A5 [Jatropha curcas]
20 Hb_001754_240 0.1505004579 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_140616_020 Hb_140616_020 Hb_000740_070 Hb_000740_070 Hb_140616_020--Hb_000740_070 Hb_000617_220 Hb_000617_220 Hb_140616_020--Hb_000617_220 Hb_000107_170 Hb_000107_170 Hb_140616_020--Hb_000107_170 Hb_000359_330 Hb_000359_330 Hb_140616_020--Hb_000359_330 Hb_007007_050 Hb_007007_050 Hb_140616_020--Hb_007007_050 Hb_010968_010 Hb_010968_010 Hb_140616_020--Hb_010968_010 Hb_001474_030 Hb_001474_030 Hb_000740_070--Hb_001474_030 Hb_003656_160 Hb_003656_160 Hb_000740_070--Hb_003656_160 Hb_005701_040 Hb_005701_040 Hb_000740_070--Hb_005701_040 Hb_001504_150 Hb_001504_150 Hb_000740_070--Hb_001504_150 Hb_004678_020 Hb_004678_020 Hb_000740_070--Hb_004678_020 Hb_007164_020 Hb_007164_020 Hb_000740_070--Hb_007164_020 Hb_003091_010 Hb_003091_010 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_000107_170--Hb_003091_010 Hb_000107_170--Hb_000359_330 Hb_000107_170--Hb_001474_030 Hb_000014_170 Hb_000014_170 Hb_000107_170--Hb_000014_170 Hb_000107_170--Hb_000617_220 Hb_001754_170 Hb_001754_170 Hb_000107_170--Hb_001754_170 Hb_000359_330--Hb_011848_010 Hb_000359_330--Hb_003091_010 Hb_000808_250 Hb_000808_250 Hb_000359_330--Hb_000808_250 Hb_000394_190 Hb_000394_190 Hb_000359_330--Hb_000394_190 Hb_000359_330--Hb_006623_020 Hb_004450_060 Hb_004450_060 Hb_000359_330--Hb_004450_060 Hb_002292_010 Hb_002292_010 Hb_007007_050--Hb_002292_010 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_007007_050--Hb_000359_330 Hb_000676_050 Hb_000676_050 Hb_010968_010--Hb_000676_050 Hb_000205_120 Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_010968_010--Hb_002292_010 Hb_010968_010--Hb_001504_150 Hb_010968_010--Hb_002784_050 Hb_000920_280 Hb_000920_280 Hb_010968_010--Hb_000920_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2029 5.54247 3.30227 5.62776 13.4841 6.41394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.90438 6.85884 4.17722 1.60106 0.985498

CAGE analysis