Hb_103624_010

Information

Type -
Description -
Location Contig103624: 1568-2167
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G149300g
description hypothetical protein
nr
ID XP_012092489.1
description PREDICTED: protein catecholamines up-like [Jatropha curcas]
swissprot
ID P01042
description Kininogen-1 OS=Homo sapiens GN=KNG1 PE=1 SV=2
trembl
ID V7CW99
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G149300g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103624_010 0.0 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
2 Hb_027380_160 0.1632811947 - - -
3 Hb_000926_270 0.1638652277 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]
4 Hb_000684_300 0.1664639414 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
5 Hb_030414_050 0.171558341 - - -
6 Hb_000692_260 0.1731456194 - - PREDICTED: uncharacterized protein LOC105635282 [Jatropha curcas]
7 Hb_001016_060 0.1734655589 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001633_100 0.1751307623 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
9 Hb_003581_110 0.1757005952 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
10 Hb_074683_020 0.180609374 - - PREDICTED: 60S ribosomal protein L27-3 [Jatropha curcas]
11 Hb_075812_010 0.1814269951 - - hypothetical protein POPTR_0005s04330g [Populus trichocarpa]
12 Hb_024399_010 0.1839842825 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
13 Hb_004102_100 0.1888236521 - - PREDICTED: periodic tryptophan protein 2 homolog [Jatropha curcas]
14 Hb_000093_130 0.1903007466 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
15 Hb_000059_040 0.1906150441 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
16 Hb_003605_070 0.19127866 - - PREDICTED: angio-associated migratory cell protein [Jatropha curcas]
17 Hb_002843_100 0.1912962769 - - -
18 Hb_007416_200 0.1926360229 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
19 Hb_003682_050 0.1937552983 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
20 Hb_001377_050 0.19466493 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]

Gene co-expression network

sample Hb_103624_010 Hb_103624_010 Hb_027380_160 Hb_027380_160 Hb_103624_010--Hb_027380_160 Hb_000926_270 Hb_000926_270 Hb_103624_010--Hb_000926_270 Hb_000684_300 Hb_000684_300 Hb_103624_010--Hb_000684_300 Hb_030414_050 Hb_030414_050 Hb_103624_010--Hb_030414_050 Hb_000692_260 Hb_000692_260 Hb_103624_010--Hb_000692_260 Hb_001016_060 Hb_001016_060 Hb_103624_010--Hb_001016_060 Hb_003682_050 Hb_003682_050 Hb_027380_160--Hb_003682_050 Hb_063100_010 Hb_063100_010 Hb_027380_160--Hb_063100_010 Hb_001926_040 Hb_001926_040 Hb_027380_160--Hb_001926_040 Hb_024399_010 Hb_024399_010 Hb_027380_160--Hb_024399_010 Hb_011716_040 Hb_011716_040 Hb_027380_160--Hb_011716_040 Hb_000340_010 Hb_000340_010 Hb_027380_160--Hb_000340_010 Hb_002149_040 Hb_002149_040 Hb_000926_270--Hb_002149_040 Hb_005016_030 Hb_005016_030 Hb_000926_270--Hb_005016_030 Hb_001776_080 Hb_001776_080 Hb_000926_270--Hb_001776_080 Hb_000953_140 Hb_000953_140 Hb_000926_270--Hb_000953_140 Hb_000926_270--Hb_000692_260 Hb_000926_270--Hb_001016_060 Hb_007416_200 Hb_007416_200 Hb_000684_300--Hb_007416_200 Hb_000093_130 Hb_000093_130 Hb_000684_300--Hb_000093_130 Hb_001473_190 Hb_001473_190 Hb_000684_300--Hb_001473_190 Hb_003813_200 Hb_003813_200 Hb_000684_300--Hb_003813_200 Hb_005333_020 Hb_005333_020 Hb_000684_300--Hb_005333_020 Hb_000116_570 Hb_000116_570 Hb_000684_300--Hb_000116_570 Hb_060437_010 Hb_060437_010 Hb_030414_050--Hb_060437_010 Hb_003050_090 Hb_003050_090 Hb_030414_050--Hb_003050_090 Hb_000692_170 Hb_000692_170 Hb_030414_050--Hb_000692_170 Hb_002192_070 Hb_002192_070 Hb_030414_050--Hb_002192_070 Hb_030414_050--Hb_007416_200 Hb_030414_050--Hb_000093_130 Hb_000692_260--Hb_001016_060 Hb_003605_070 Hb_003605_070 Hb_000692_260--Hb_003605_070 Hb_000284_200 Hb_000284_200 Hb_000692_260--Hb_000284_200 Hb_000300_540 Hb_000300_540 Hb_000692_260--Hb_000300_540 Hb_007786_010 Hb_007786_010 Hb_000692_260--Hb_007786_010 Hb_006173_020 Hb_006173_020 Hb_001016_060--Hb_006173_020 Hb_001016_060--Hb_002149_040 Hb_001016_060--Hb_003605_070 Hb_001016_060--Hb_005016_030 Hb_000363_340 Hb_000363_340 Hb_001016_060--Hb_000363_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.62216 0.628239 0.306422 0 1.78577 1.12459
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.201951 0.872938 0.555181 0.227811 0

CAGE analysis