Hb_034812_010

Information

Type -
Description -
Location Contig34812: 1261-6172
Sequence    

Annotation

kegg
ID bvg:104894399
description uncharacterized LOC104894399
nr
ID XP_010678922.1
description PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A0D3A328
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0003676
description retroelement pol poly

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034812_010 0.0 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
2 Hb_061466_010 0.1456168219 - - hypothetical protein POPTR_0013s14640g [Populus trichocarpa]
3 Hb_028248_010 0.2907838824 - - polyprotein [Oryza australiensis]
4 Hb_016529_010 0.30322621 - - polyprotein [Oryza australiensis]
5 Hb_001247_260 0.3055644915 - - -
6 Hb_000175_650 0.3232205661 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
7 Hb_000834_110 0.3238808388 - - uncharacterized protein LOC100501873 [Zea mays]
8 Hb_000636_010 0.3278536459 - - PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
9 Hb_000733_250 0.3295522597 - - serine/threonine protein phosphatase PP1 isozyme 1 [Loa loa]
10 Hb_010710_100 0.3329346219 - - kinase, putative [Ricinus communis]
11 Hb_000571_130 0.3399110503 - - kinase, putative [Ricinus communis]
12 Hb_153395_010 0.3413414471 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_166210_010 0.3415811092 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002320_030 0.3423115404 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_036731_010 0.3440799532 - - -
16 Hb_006449_060 0.3443646065 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
17 Hb_001514_140 0.3444464297 - - -
18 Hb_010532_010 0.3444499128 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
19 Hb_018746_010 0.3448437634 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
20 Hb_028048_020 0.3461259768 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_034812_010 Hb_034812_010 Hb_061466_010 Hb_061466_010 Hb_034812_010--Hb_061466_010 Hb_028248_010 Hb_028248_010 Hb_034812_010--Hb_028248_010 Hb_016529_010 Hb_016529_010 Hb_034812_010--Hb_016529_010 Hb_001247_260 Hb_001247_260 Hb_034812_010--Hb_001247_260 Hb_000175_650 Hb_000175_650 Hb_034812_010--Hb_000175_650 Hb_000834_110 Hb_000834_110 Hb_034812_010--Hb_000834_110 Hb_061466_010--Hb_000834_110 Hb_061466_010--Hb_000175_650 Hb_020287_010 Hb_020287_010 Hb_061466_010--Hb_020287_010 Hb_010532_010 Hb_010532_010 Hb_061466_010--Hb_010532_010 Hb_006449_060 Hb_006449_060 Hb_061466_010--Hb_006449_060 Hb_011716_120 Hb_011716_120 Hb_028248_010--Hb_011716_120 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_165100_010 Hb_165100_010 Hb_028248_010--Hb_165100_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010 Hb_085793_010 Hb_085793_010 Hb_028248_010--Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_028248_010--Hb_003205_040 Hb_000733_250 Hb_000733_250 Hb_016529_010--Hb_000733_250 Hb_000571_130 Hb_000571_130 Hb_016529_010--Hb_000571_130 Hb_002320_030 Hb_002320_030 Hb_016529_010--Hb_002320_030 Hb_016529_010--Hb_000175_650 Hb_016529_010--Hb_000834_110 Hb_000636_010 Hb_000636_010 Hb_016529_010--Hb_000636_010 Hb_001247_260--Hb_000636_010 Hb_000959_050 Hb_000959_050 Hb_001247_260--Hb_000959_050 Hb_032733_030 Hb_032733_030 Hb_001247_260--Hb_032733_030 Hb_080033_020 Hb_080033_020 Hb_001247_260--Hb_080033_020 Hb_000512_050 Hb_000512_050 Hb_001247_260--Hb_000512_050 Hb_001247_260--Hb_028248_010 Hb_000175_650--Hb_000834_110 Hb_000175_650--Hb_000571_130 Hb_000175_650--Hb_020287_010 Hb_002471_010 Hb_002471_010 Hb_000175_650--Hb_002471_010 Hb_000877_010 Hb_000877_010 Hb_000175_650--Hb_000877_010 Hb_000834_110--Hb_020287_010 Hb_000834_110--Hb_002471_010 Hb_000834_110--Hb_000571_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0101561 0 0.00916649 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00646649 0.017506

CAGE analysis