Hb_002320_030

Information

Type -
Description -
Location Contig2320: 34381-34683
Sequence    

Annotation

kegg
ID rcu:RCOM_1704530
description leucine-rich repeat-containing protein, putative (EC:3.1.3.16)
nr
ID XP_002518243.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8RWE5
description Plant intracellular Ras-group-related LRR protein 8 OS=Arabidopsis thaliana GN=PIRL8 PE=2 SV=1
trembl
ID B9RWX4
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1704530 PE=4 SV=1
Gene Ontology
ID GO:0005515
description plant intracellular ras-group-related lrr protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002320_030 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_000733_250 0.0662625254 - - serine/threonine protein phosphatase PP1 isozyme 1 [Loa loa]
3 Hb_016529_010 0.1513683866 - - polyprotein [Oryza australiensis]
4 Hb_097889_010 0.2368724734 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
5 Hb_011537_090 0.2371102931 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
6 Hb_009188_010 0.2376007817 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_008976_010 0.2378143011 - - -
8 Hb_000710_120 0.2378747991 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
9 Hb_001309_030 0.2379147661 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_004019_100 0.2379362646 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
11 Hb_001972_020 0.2380541974 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_001817_190 0.2380808283 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_010783_010 0.2380982195 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_124540_020 0.2389813182 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_090778_010 0.2391921748 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
16 Hb_011616_060 0.2392339519 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
17 Hb_001662_020 0.2392521199 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
18 Hb_026532_010 0.2396520079 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
19 Hb_186440_010 0.2396695904 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_027890_010 0.2496523749 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_002320_030 Hb_002320_030 Hb_000733_250 Hb_000733_250 Hb_002320_030--Hb_000733_250 Hb_016529_010 Hb_016529_010 Hb_002320_030--Hb_016529_010 Hb_097889_010 Hb_097889_010 Hb_002320_030--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_002320_030--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_002320_030--Hb_009188_010 Hb_008976_010 Hb_008976_010 Hb_002320_030--Hb_008976_010 Hb_000733_250--Hb_016529_010 Hb_000571_130 Hb_000571_130 Hb_000733_250--Hb_000571_130 Hb_161017_020 Hb_161017_020 Hb_000733_250--Hb_161017_020 Hb_000175_650 Hb_000175_650 Hb_000733_250--Hb_000175_650 Hb_000636_010 Hb_000636_010 Hb_000733_250--Hb_000636_010 Hb_016529_010--Hb_000571_130 Hb_016529_010--Hb_000175_650 Hb_000834_110 Hb_000834_110 Hb_016529_010--Hb_000834_110 Hb_016529_010--Hb_000636_010 Hb_097889_010--Hb_011537_090 Hb_097889_010--Hb_009188_010 Hb_097889_010--Hb_008976_010 Hb_000710_120 Hb_000710_120 Hb_097889_010--Hb_000710_120 Hb_001309_030 Hb_001309_030 Hb_097889_010--Hb_001309_030 Hb_004019_100 Hb_004019_100 Hb_097889_010--Hb_004019_100 Hb_011537_090--Hb_009188_010 Hb_011537_090--Hb_008976_010 Hb_011537_090--Hb_000710_120 Hb_011537_090--Hb_001309_030 Hb_011537_090--Hb_004019_100 Hb_009188_010--Hb_008976_010 Hb_009188_010--Hb_000710_120 Hb_009188_010--Hb_001309_030 Hb_009188_010--Hb_004019_100 Hb_001972_020 Hb_001972_020 Hb_009188_010--Hb_001972_020 Hb_001817_190 Hb_001817_190 Hb_009188_010--Hb_001817_190 Hb_008976_010--Hb_000710_120 Hb_008976_010--Hb_001309_030 Hb_008976_010--Hb_004019_100 Hb_008976_010--Hb_001972_020 Hb_008976_010--Hb_001817_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.140692 0 0.29163 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.892926

CAGE analysis