Hb_000834_110

Information

Type -
Description -
Location Contig834: 73237-73587
Sequence    

Annotation

kegg
ID zma:100501873
description uncharacterized LOC100501873
nr
ID NP_001183443.1
description uncharacterized protein LOC100501873 [Zea mays]
swissprot
ID -
description -
trembl
ID A0A0A9KGN1
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000834_110 0.0 - - uncharacterized protein LOC100501873 [Zea mays]
2 Hb_000175_650 0.1122870608 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
3 Hb_020287_010 0.1725162711 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002471_010 0.2179418386 transcription factor TF Family: PHD hypothetical protein JCGZ_04821 [Jatropha curcas]
5 Hb_016529_010 0.2409366664 - - polyprotein [Oryza australiensis]
6 Hb_000571_130 0.242587611 - - kinase, putative [Ricinus communis]
7 Hb_061466_010 0.2577936384 - - hypothetical protein POPTR_0013s14640g [Populus trichocarpa]
8 Hb_000175_640 0.3011796138 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
9 Hb_034812_010 0.3238808388 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
10 Hb_000733_250 0.325660791 - - serine/threonine protein phosphatase PP1 isozyme 1 [Loa loa]
11 Hb_001935_050 0.3302564392 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
12 Hb_000864_040 0.3305923579 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000189_610 0.3308126057 - - Late embryogenesis abundant protein D-34, putative [Ricinus communis]
14 Hb_001543_010 0.3308810539 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010904_020 0.3312883231 - - PREDICTED: probable receptor-like protein kinase At5g39030 [Populus euphratica]
16 Hb_124540_010 0.3314711941 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1-like [Populus euphratica]
17 Hb_002006_010 0.3316811082 - - Adenine nucleotide alpha hydrolases-like superfamily protein, putative isoform 1 [Theobroma cacao]
18 Hb_003541_010 0.3320127286 - - transcription factor, putative [Ricinus communis]
19 Hb_014870_010 0.3322552114 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
20 Hb_000084_270 0.335263893 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]

Gene co-expression network

sample Hb_000834_110 Hb_000834_110 Hb_000175_650 Hb_000175_650 Hb_000834_110--Hb_000175_650 Hb_020287_010 Hb_020287_010 Hb_000834_110--Hb_020287_010 Hb_002471_010 Hb_002471_010 Hb_000834_110--Hb_002471_010 Hb_016529_010 Hb_016529_010 Hb_000834_110--Hb_016529_010 Hb_000571_130 Hb_000571_130 Hb_000834_110--Hb_000571_130 Hb_061466_010 Hb_061466_010 Hb_000834_110--Hb_061466_010 Hb_000175_650--Hb_000571_130 Hb_000175_650--Hb_020287_010 Hb_000175_650--Hb_016529_010 Hb_000175_650--Hb_002471_010 Hb_000877_010 Hb_000877_010 Hb_000175_650--Hb_000877_010 Hb_020287_010--Hb_002471_010 Hb_007676_090 Hb_007676_090 Hb_020287_010--Hb_007676_090 Hb_003428_020 Hb_003428_020 Hb_020287_010--Hb_003428_020 Hb_000037_210 Hb_000037_210 Hb_020287_010--Hb_000037_210 Hb_099509_010 Hb_099509_010 Hb_002471_010--Hb_099509_010 Hb_009083_060 Hb_009083_060 Hb_002471_010--Hb_009083_060 Hb_002471_010--Hb_000037_210 Hb_002471_010--Hb_003428_020 Hb_000103_170 Hb_000103_170 Hb_002471_010--Hb_000103_170 Hb_000733_250 Hb_000733_250 Hb_016529_010--Hb_000733_250 Hb_016529_010--Hb_000571_130 Hb_002320_030 Hb_002320_030 Hb_016529_010--Hb_002320_030 Hb_000636_010 Hb_000636_010 Hb_016529_010--Hb_000636_010 Hb_000571_130--Hb_000733_250 Hb_000039_140 Hb_000039_140 Hb_000571_130--Hb_000039_140 Hb_007317_040 Hb_007317_040 Hb_000571_130--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000571_130--Hb_000185_110 Hb_034812_010 Hb_034812_010 Hb_061466_010--Hb_034812_010 Hb_061466_010--Hb_000175_650 Hb_061466_010--Hb_020287_010 Hb_010532_010 Hb_010532_010 Hb_061466_010--Hb_010532_010 Hb_006449_060 Hb_006449_060 Hb_061466_010--Hb_006449_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.474153 0 0.206105 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.341275

CAGE analysis