Hb_002471_010

Information

Type transcription factor
Description TF Family: PHD
Location Contig2471: 10973-13428
Sequence    

Annotation

kegg
ID rcu:RCOM_0778080
description DNA binding protein, putative
nr
ID KDP38178.1
description hypothetical protein JCGZ_04821 [Jatropha curcas]
swissprot
ID Q9FMS5
description PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana GN=MS1 PE=1 SV=1
trembl
ID A0A067KT99
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04821 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein male sterility 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002471_010 0.0 transcription factor TF Family: PHD hypothetical protein JCGZ_04821 [Jatropha curcas]
2 Hb_020287_010 0.051916884 - - conserved hypothetical protein [Ricinus communis]
3 Hb_099509_010 0.1838910252 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
4 Hb_009083_060 0.185535833 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
5 Hb_000037_210 0.1856899618 - - -
6 Hb_003428_020 0.1861849095 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
7 Hb_000103_170 0.186984178 - - uncharacterized protein LOC100501254 [Zea mays]
8 Hb_007676_090 0.1870946955 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
9 Hb_006277_090 0.1886997599 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]
10 Hb_000186_020 0.1958032224 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
11 Hb_000084_270 0.1984670932 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
12 Hb_000032_130 0.1994924779 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 12 [Jatropha curcas]
13 Hb_097104_010 0.2026919556 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
14 Hb_003541_010 0.2033178204 - - transcription factor, putative [Ricinus communis]
15 Hb_002701_100 0.2040545305 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
16 Hb_014870_010 0.2081749519 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
17 Hb_002571_110 0.2145410304 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
18 Hb_001085_280 0.2151017082 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
19 Hb_003729_050 0.2176761394 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
20 Hb_000834_110 0.2179418386 - - uncharacterized protein LOC100501873 [Zea mays]

Gene co-expression network

sample Hb_002471_010 Hb_002471_010 Hb_020287_010 Hb_020287_010 Hb_002471_010--Hb_020287_010 Hb_099509_010 Hb_099509_010 Hb_002471_010--Hb_099509_010 Hb_009083_060 Hb_009083_060 Hb_002471_010--Hb_009083_060 Hb_000037_210 Hb_000037_210 Hb_002471_010--Hb_000037_210 Hb_003428_020 Hb_003428_020 Hb_002471_010--Hb_003428_020 Hb_000103_170 Hb_000103_170 Hb_002471_010--Hb_000103_170 Hb_000834_110 Hb_000834_110 Hb_020287_010--Hb_000834_110 Hb_000175_650 Hb_000175_650 Hb_020287_010--Hb_000175_650 Hb_007676_090 Hb_007676_090 Hb_020287_010--Hb_007676_090 Hb_020287_010--Hb_003428_020 Hb_020287_010--Hb_000037_210 Hb_099509_010--Hb_000103_170 Hb_006277_090 Hb_006277_090 Hb_099509_010--Hb_006277_090 Hb_099509_010--Hb_009083_060 Hb_000032_130 Hb_000032_130 Hb_099509_010--Hb_000032_130 Hb_099509_010--Hb_000037_210 Hb_099509_010--Hb_003428_020 Hb_009083_060--Hb_000037_210 Hb_009083_060--Hb_003428_020 Hb_009083_060--Hb_007676_090 Hb_000186_020 Hb_000186_020 Hb_009083_060--Hb_000186_020 Hb_000084_270 Hb_000084_270 Hb_009083_060--Hb_000084_270 Hb_000037_210--Hb_003428_020 Hb_000037_210--Hb_007676_090 Hb_000037_210--Hb_000186_020 Hb_000037_210--Hb_000084_270 Hb_003428_020--Hb_007676_090 Hb_003428_020--Hb_000186_020 Hb_003428_020--Hb_000084_270 Hb_000103_170--Hb_006277_090 Hb_000103_170--Hb_000032_130 Hb_097104_010 Hb_097104_010 Hb_000103_170--Hb_097104_010 Hb_000103_170--Hb_009083_060 Hb_000103_170--Hb_000037_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.106736 0 0.0100552 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0379375

CAGE analysis