Hb_020287_010

Information

Type -
Description -
Location Contig20287: 12410-12958
Sequence    

Annotation

kegg
ID rcu:RCOM_0724580
description hypothetical protein
nr
ID XP_002524890.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SFX1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0724580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020287_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002471_010 0.051916884 transcription factor TF Family: PHD hypothetical protein JCGZ_04821 [Jatropha curcas]
3 Hb_000834_110 0.1725162711 - - uncharacterized protein LOC100501873 [Zea mays]
4 Hb_000175_650 0.1728759408 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
5 Hb_007676_090 0.204824041 - - PREDICTED: uncharacterized protein LOC105644038 [Jatropha curcas]
6 Hb_003428_020 0.2049505174 - - PREDICTED: uncharacterized protein LOC105140247 [Populus euphratica]
7 Hb_000037_210 0.2050682314 - - -
8 Hb_009083_060 0.205113497 - - PREDICTED: uncharacterized protein LOC103344557 [Prunus mume]
9 Hb_000186_020 0.2063870455 - - PREDICTED: uncharacterized protein LOC104901327 [Beta vulgaris subsp. vulgaris]
10 Hb_000084_270 0.2073767014 - - hypothetical protein POPTR_0006s22820g [Populus trichocarpa]
11 Hb_014870_010 0.2119822236 - - PREDICTED: uncharacterized protein LOC104891359 [Beta vulgaris subsp. vulgaris]
12 Hb_099509_010 0.215860847 - - PREDICTED: vacuolar iron transporter 1-like isoform X2 [Jatropha curcas]
13 Hb_002571_110 0.2216237295 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
14 Hb_000103_170 0.2221174363 - - uncharacterized protein LOC100501254 [Zea mays]
15 Hb_001935_050 0.2235977421 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 7 [Jatropha curcas]
16 Hb_006277_090 0.2249907362 - - PREDICTED: uncharacterized protein LOC105649700 [Jatropha curcas]
17 Hb_001085_280 0.2274060302 transcription factor TF Family: bHLH PREDICTED: transcription factor FAMA isoform X2 [Populus euphratica]
18 Hb_002701_100 0.2290301402 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
19 Hb_003541_010 0.230135357 - - transcription factor, putative [Ricinus communis]
20 Hb_000864_040 0.2316076509 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_020287_010 Hb_020287_010 Hb_002471_010 Hb_002471_010 Hb_020287_010--Hb_002471_010 Hb_000834_110 Hb_000834_110 Hb_020287_010--Hb_000834_110 Hb_000175_650 Hb_000175_650 Hb_020287_010--Hb_000175_650 Hb_007676_090 Hb_007676_090 Hb_020287_010--Hb_007676_090 Hb_003428_020 Hb_003428_020 Hb_020287_010--Hb_003428_020 Hb_000037_210 Hb_000037_210 Hb_020287_010--Hb_000037_210 Hb_099509_010 Hb_099509_010 Hb_002471_010--Hb_099509_010 Hb_009083_060 Hb_009083_060 Hb_002471_010--Hb_009083_060 Hb_002471_010--Hb_000037_210 Hb_002471_010--Hb_003428_020 Hb_000103_170 Hb_000103_170 Hb_002471_010--Hb_000103_170 Hb_000834_110--Hb_000175_650 Hb_000834_110--Hb_002471_010 Hb_016529_010 Hb_016529_010 Hb_000834_110--Hb_016529_010 Hb_000571_130 Hb_000571_130 Hb_000834_110--Hb_000571_130 Hb_061466_010 Hb_061466_010 Hb_000834_110--Hb_061466_010 Hb_000175_650--Hb_000571_130 Hb_000175_650--Hb_016529_010 Hb_000175_650--Hb_002471_010 Hb_000877_010 Hb_000877_010 Hb_000175_650--Hb_000877_010 Hb_007676_090--Hb_003428_020 Hb_007676_090--Hb_000037_210 Hb_007676_090--Hb_009083_060 Hb_000186_020 Hb_000186_020 Hb_007676_090--Hb_000186_020 Hb_000084_270 Hb_000084_270 Hb_007676_090--Hb_000084_270 Hb_014870_010 Hb_014870_010 Hb_007676_090--Hb_014870_010 Hb_003428_020--Hb_000037_210 Hb_003428_020--Hb_009083_060 Hb_003428_020--Hb_000186_020 Hb_003428_020--Hb_000084_270 Hb_003428_020--Hb_099509_010 Hb_000037_210--Hb_009083_060 Hb_000037_210--Hb_000186_020 Hb_000037_210--Hb_000084_270 Hb_000037_210--Hb_099509_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.565766 0 0.0727931 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.255873

CAGE analysis