Hb_016529_010

Information

Type -
Description -
Location Contig16529: 7283-11272
Sequence    

Annotation

kegg
ID sita:101776990
description uncharacterized LOC101776990
nr
ID BAA22288.1
description polyprotein [Oryza australiensis]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID O23864
description Polyprotein OS=Oryza australiensis PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty1-copia subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016529_010 0.0 - - polyprotein [Oryza australiensis]
2 Hb_000733_250 0.0952970429 - - serine/threonine protein phosphatase PP1 isozyme 1 [Loa loa]
3 Hb_000571_130 0.1165325041 - - kinase, putative [Ricinus communis]
4 Hb_002320_030 0.1513683866 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_000175_650 0.1768681309 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
6 Hb_000834_110 0.2409366664 - - uncharacterized protein LOC100501873 [Zea mays]
7 Hb_000636_010 0.2778263936 - - PREDICTED: uncharacterized protein LOC105767086 [Gossypium raimondii]
8 Hb_000692_090 0.2831425175 - - -
9 Hb_126077_010 0.2908489245 - - -
10 Hb_001024_010 0.2908831931 - - phosphofructokinase [Hevea brasiliensis]
11 Hb_000028_290 0.2908856679 - - hypothetical protein JCGZ_25310 [Jatropha curcas]
12 Hb_052135_050 0.2910059498 - - PREDICTED: probable pectinesterase 67 [Jatropha curcas]
13 Hb_009026_010 0.2910349684 - - Squalene monooxygenase, putative [Ricinus communis]
14 Hb_163122_010 0.2911842272 - - protein binding protein, putative [Ricinus communis]
15 Hb_081843_010 0.2912070187 - - PREDICTED: uncharacterized protein LOC104880938 [Vitis vinifera]
16 Hb_054127_030 0.2912699095 - - PREDICTED: putative L-type lectin-domain containing receptor kinase II.2 [Jatropha curcas]
17 Hb_000192_100 0.2916816346 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_019449_010 0.2917155783 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_002928_050 0.2921738982 - - -
20 Hb_002081_240 0.2925319637 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]

Gene co-expression network

sample Hb_016529_010 Hb_016529_010 Hb_000733_250 Hb_000733_250 Hb_016529_010--Hb_000733_250 Hb_000571_130 Hb_000571_130 Hb_016529_010--Hb_000571_130 Hb_002320_030 Hb_002320_030 Hb_016529_010--Hb_002320_030 Hb_000175_650 Hb_000175_650 Hb_016529_010--Hb_000175_650 Hb_000834_110 Hb_000834_110 Hb_016529_010--Hb_000834_110 Hb_000636_010 Hb_000636_010 Hb_016529_010--Hb_000636_010 Hb_000733_250--Hb_002320_030 Hb_000733_250--Hb_000571_130 Hb_161017_020 Hb_161017_020 Hb_000733_250--Hb_161017_020 Hb_000733_250--Hb_000175_650 Hb_000733_250--Hb_000636_010 Hb_000571_130--Hb_000175_650 Hb_000039_140 Hb_000039_140 Hb_000571_130--Hb_000039_140 Hb_007317_040 Hb_007317_040 Hb_000571_130--Hb_007317_040 Hb_000185_110 Hb_000185_110 Hb_000571_130--Hb_000185_110 Hb_097889_010 Hb_097889_010 Hb_002320_030--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_002320_030--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_002320_030--Hb_009188_010 Hb_008976_010 Hb_008976_010 Hb_002320_030--Hb_008976_010 Hb_000175_650--Hb_000834_110 Hb_020287_010 Hb_020287_010 Hb_000175_650--Hb_020287_010 Hb_002471_010 Hb_002471_010 Hb_000175_650--Hb_002471_010 Hb_000877_010 Hb_000877_010 Hb_000175_650--Hb_000877_010 Hb_000834_110--Hb_020287_010 Hb_000834_110--Hb_002471_010 Hb_000834_110--Hb_000571_130 Hb_061466_010 Hb_061466_010 Hb_000834_110--Hb_061466_010 Hb_001247_260 Hb_001247_260 Hb_000636_010--Hb_001247_260 Hb_000959_050 Hb_000959_050 Hb_000636_010--Hb_000959_050 Hb_028048_020 Hb_028048_020 Hb_000636_010--Hb_028048_020 Hb_080033_020 Hb_080033_020 Hb_000636_010--Hb_080033_020 Hb_032733_030 Hb_032733_030 Hb_000636_010--Hb_032733_030 Hb_003527_020 Hb_003527_020 Hb_000636_010--Hb_003527_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00905863 0 0.00612627 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0233184

CAGE analysis