Hb_061466_010

Information

Type -
Description -
Location Contig61466: 100-837
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14640g
description POPTRDRAFT_571830; hypothetical protein
nr
ID XP_002319940.2
description hypothetical protein POPTR_0013s14640g [Populus trichocarpa]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID B9I6I7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14640g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061466_010 0.0 - - hypothetical protein POPTR_0013s14640g [Populus trichocarpa]
2 Hb_034812_010 0.1456168219 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
3 Hb_000834_110 0.2577936384 - - uncharacterized protein LOC100501873 [Zea mays]
4 Hb_000175_650 0.2741842771 - - PREDICTED: cyclin-A2-2-like [Jatropha curcas]
5 Hb_020287_010 0.3097505599 - - conserved hypothetical protein [Ricinus communis]
6 Hb_010532_010 0.3152789969 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
7 Hb_006449_060 0.3154564168 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_000649_260 0.3158071528 - - uncharacterized LOC105634108 [Jatropha curcas]
9 Hb_004837_250 0.3186282333 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002477_060 0.3210377619 - - conserved hypothetical protein [Ricinus communis]
11 Hb_028048_020 0.3321544846 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
12 Hb_014658_010 0.3335258406 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
13 Hb_002016_180 0.3342186323 - - beta-glucosidase, putative [Ricinus communis]
14 Hb_016529_010 0.3359198309 - - polyprotein [Oryza australiensis]
15 Hb_005622_030 0.3368753442 - - transferase, putative [Ricinus communis]
16 Hb_002471_010 0.3373786003 transcription factor TF Family: PHD hypothetical protein JCGZ_04821 [Jatropha curcas]
17 Hb_000571_130 0.3375607866 - - kinase, putative [Ricinus communis]
18 Hb_010710_100 0.3423077854 - - kinase, putative [Ricinus communis]
19 Hb_152180_010 0.3430515724 - - Blue copper protein precursor, putative [Ricinus communis]
20 Hb_005207_010 0.3435867638 - - PREDICTED: zinc finger Ran-binding domain-containing protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_061466_010 Hb_061466_010 Hb_034812_010 Hb_034812_010 Hb_061466_010--Hb_034812_010 Hb_000834_110 Hb_000834_110 Hb_061466_010--Hb_000834_110 Hb_000175_650 Hb_000175_650 Hb_061466_010--Hb_000175_650 Hb_020287_010 Hb_020287_010 Hb_061466_010--Hb_020287_010 Hb_010532_010 Hb_010532_010 Hb_061466_010--Hb_010532_010 Hb_006449_060 Hb_006449_060 Hb_061466_010--Hb_006449_060 Hb_028248_010 Hb_028248_010 Hb_034812_010--Hb_028248_010 Hb_016529_010 Hb_016529_010 Hb_034812_010--Hb_016529_010 Hb_001247_260 Hb_001247_260 Hb_034812_010--Hb_001247_260 Hb_034812_010--Hb_000175_650 Hb_034812_010--Hb_000834_110 Hb_000834_110--Hb_000175_650 Hb_000834_110--Hb_020287_010 Hb_002471_010 Hb_002471_010 Hb_000834_110--Hb_002471_010 Hb_000834_110--Hb_016529_010 Hb_000571_130 Hb_000571_130 Hb_000834_110--Hb_000571_130 Hb_000175_650--Hb_000571_130 Hb_000175_650--Hb_020287_010 Hb_000175_650--Hb_016529_010 Hb_000175_650--Hb_002471_010 Hb_000877_010 Hb_000877_010 Hb_000175_650--Hb_000877_010 Hb_020287_010--Hb_002471_010 Hb_007676_090 Hb_007676_090 Hb_020287_010--Hb_007676_090 Hb_003428_020 Hb_003428_020 Hb_020287_010--Hb_003428_020 Hb_000037_210 Hb_000037_210 Hb_020287_010--Hb_000037_210 Hb_010532_010--Hb_006449_060 Hb_000649_260 Hb_000649_260 Hb_010532_010--Hb_000649_260 Hb_002233_050 Hb_002233_050 Hb_010532_010--Hb_002233_050 Hb_018746_010 Hb_018746_010 Hb_010532_010--Hb_018746_010 Hb_001514_140 Hb_001514_140 Hb_010532_010--Hb_001514_140 Hb_005207_010 Hb_005207_010 Hb_010532_010--Hb_005207_010 Hb_006449_060--Hb_000649_260 Hb_006449_060--Hb_002233_050 Hb_006449_060--Hb_018746_010 Hb_006449_060--Hb_005207_010 Hb_006449_060--Hb_001514_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.149262 0 0.0655571 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0480186 0.1177

CAGE analysis