Hb_011716_120

Information

Type -
Description -
Location Contig11716: 102116-102793
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa026856mg
description hypothetical protein
nr
ID XP_010264418.1
description PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID M5W531
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026856mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description low quality protein: s-type anion channel slah3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05321: 92208-104800
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_120 0.0 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
2 Hb_028248_010 0.1159370857 - - polyprotein [Oryza australiensis]
3 Hb_011987_010 0.1217228041 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_005666_030 0.1343709465 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
5 Hb_005551_030 0.1351617514 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
6 Hb_106274_010 0.1358741096 - - hypothetical protein VITISV_008825 [Vitis vinifera]
7 Hb_001231_020 0.1371451197 - - -
8 Hb_004968_090 0.1373864534 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
9 Hb_015824_020 0.1376704835 - - -
10 Hb_023386_030 0.1380004392 - - -
11 Hb_001691_130 0.155355119 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
12 Hb_019135_010 0.1705911864 - - -
13 Hb_002630_030 0.1709520016 - - OSIGBa0132I10.1 [Oryza sativa Indica Group]
14 Hb_000497_310 0.1741649572 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007632_140 0.1756666371 - - -
16 Hb_011931_090 0.1842558674 - - -
17 Hb_000367_150 0.184793108 - - -
18 Hb_002041_010 0.186297942 - - -
19 Hb_000522_030 0.1925833708 - - hypothetical protein VITISV_006017 [Vitis vinifera]
20 Hb_032733_030 0.1936833303 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_011716_120 Hb_011716_120 Hb_028248_010 Hb_028248_010 Hb_011716_120--Hb_028248_010 Hb_011987_010 Hb_011987_010 Hb_011716_120--Hb_011987_010 Hb_005666_030 Hb_005666_030 Hb_011716_120--Hb_005666_030 Hb_005551_030 Hb_005551_030 Hb_011716_120--Hb_005551_030 Hb_106274_010 Hb_106274_010 Hb_011716_120--Hb_106274_010 Hb_001231_020 Hb_001231_020 Hb_011716_120--Hb_001231_020 Hb_017225_010 Hb_017225_010 Hb_028248_010--Hb_017225_010 Hb_165100_010 Hb_165100_010 Hb_028248_010--Hb_165100_010 Hb_028248_010--Hb_011987_010 Hb_085793_010 Hb_085793_010 Hb_028248_010--Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_028248_010--Hb_003205_040 Hb_011987_010--Hb_106274_010 Hb_011987_010--Hb_001231_020 Hb_011987_010--Hb_005551_030 Hb_011987_010--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_011987_010--Hb_004968_090 Hb_015824_020 Hb_015824_020 Hb_011987_010--Hb_015824_020 Hb_005666_030--Hb_004968_090 Hb_005666_030--Hb_005551_030 Hb_005666_030--Hb_001231_020 Hb_001691_130 Hb_001691_130 Hb_005666_030--Hb_001691_130 Hb_005666_030--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_005666_030--Hb_002630_030 Hb_005551_030--Hb_001231_020 Hb_005551_030--Hb_004968_090 Hb_005551_030--Hb_106274_010 Hb_005551_030--Hb_001691_130 Hb_005551_030--Hb_002630_030 Hb_106274_010--Hb_001231_020 Hb_106274_010--Hb_004968_090 Hb_106274_010--Hb_001691_130 Hb_001231_020--Hb_004968_090 Hb_001231_020--Hb_001691_130 Hb_001231_020--Hb_002630_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0848547 0 0.0367954 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.162597 1.04805

CAGE analysis