Hb_017225_010

Information

Type -
Description -
Location Contig17225: 12235-20161
Sequence    

Annotation

kegg
ID rcu:RCOM_0230590
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.25)
nr
ID XP_012079598.1
description PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
swissprot
ID Q8LKZ1
description Nodulation receptor kinase OS=Pisum sativum GN=NORK PE=1 SV=1
trembl
ID A0A067K7E8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12627 PE=3 SV=1
Gene Ontology
ID GO:0005622
description nodulation receptor kinase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017225_010 0.0 - - PREDICTED: nodulation receptor kinase-like [Jatropha curcas]
2 Hb_028248_010 0.1988834581 - - polyprotein [Oryza australiensis]
3 Hb_011716_120 0.2002275736 - - PREDICTED: uncharacterized protein LOC104602430 [Nelumbo nucifera]
4 Hb_185839_010 0.2123174233 - - -
5 Hb_006474_010 0.2160883775 - - hypothetical protein VITISV_032357 [Vitis vinifera]
6 Hb_002760_020 0.2281649889 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
7 Hb_122028_010 0.2302220174 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
8 Hb_001338_150 0.2483923726 - - hypothetical chloroplast RF1 [Dillenia indica]
9 Hb_007810_070 0.2490752125 - - hypothetical protein VITISV_027174 [Vitis vinifera]
10 Hb_000418_160 0.2511157651 - - -
11 Hb_034168_010 0.2546099461 - - hypothetical protein [Azospirillum sp. CAG:260]
12 Hb_165100_010 0.2561152048 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
13 Hb_003032_090 0.2580992114 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
14 Hb_032733_030 0.258466759 - - hypothetical protein CISIN_1g048657mg, partial [Citrus sinensis]
15 Hb_028872_020 0.2595392813 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
16 Hb_011987_010 0.2600540935 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
17 Hb_023386_030 0.2603602111 - - -
18 Hb_015824_020 0.2605554808 - - -
19 Hb_062192_020 0.2637523784 - - cytochrome c biogenesis FN (mitochondrion) [Hevea brasiliensis]
20 Hb_005666_030 0.2659353956 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]

Gene co-expression network

sample Hb_017225_010 Hb_017225_010 Hb_028248_010 Hb_028248_010 Hb_017225_010--Hb_028248_010 Hb_011716_120 Hb_011716_120 Hb_017225_010--Hb_011716_120 Hb_185839_010 Hb_185839_010 Hb_017225_010--Hb_185839_010 Hb_006474_010 Hb_006474_010 Hb_017225_010--Hb_006474_010 Hb_002760_020 Hb_002760_020 Hb_017225_010--Hb_002760_020 Hb_122028_010 Hb_122028_010 Hb_017225_010--Hb_122028_010 Hb_028248_010--Hb_011716_120 Hb_165100_010 Hb_165100_010 Hb_028248_010--Hb_165100_010 Hb_011987_010 Hb_011987_010 Hb_028248_010--Hb_011987_010 Hb_085793_010 Hb_085793_010 Hb_028248_010--Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_028248_010--Hb_003205_040 Hb_011716_120--Hb_011987_010 Hb_005666_030 Hb_005666_030 Hb_011716_120--Hb_005666_030 Hb_005551_030 Hb_005551_030 Hb_011716_120--Hb_005551_030 Hb_106274_010 Hb_106274_010 Hb_011716_120--Hb_106274_010 Hb_001231_020 Hb_001231_020 Hb_011716_120--Hb_001231_020 Hb_180367_010 Hb_180367_010 Hb_185839_010--Hb_180367_010 Hb_020250_020 Hb_020250_020 Hb_185839_010--Hb_020250_020 Hb_185839_010--Hb_165100_010 Hb_003739_040 Hb_003739_040 Hb_185839_010--Hb_003739_040 Hb_003567_020 Hb_003567_020 Hb_185839_010--Hb_003567_020 Hb_006474_010--Hb_003567_020 Hb_121041_010 Hb_121041_010 Hb_006474_010--Hb_121041_010 Hb_006474_010--Hb_180367_010 Hb_006474_010--Hb_003739_040 Hb_042463_070 Hb_042463_070 Hb_006474_010--Hb_042463_070 Hb_158203_010 Hb_158203_010 Hb_006474_010--Hb_158203_010 Hb_001793_040 Hb_001793_040 Hb_002760_020--Hb_001793_040 Hb_000644_020 Hb_000644_020 Hb_002760_020--Hb_000644_020 Hb_170878_020 Hb_170878_020 Hb_002760_020--Hb_170878_020 Hb_002973_120 Hb_002973_120 Hb_002760_020--Hb_002973_120 Hb_077151_010 Hb_077151_010 Hb_002760_020--Hb_077151_010 Hb_001385_070 Hb_001385_070 Hb_002760_020--Hb_001385_070 Hb_012090_020 Hb_012090_020 Hb_122028_010--Hb_012090_020 Hb_032733_020 Hb_032733_020 Hb_122028_010--Hb_032733_020 Hb_028872_020 Hb_028872_020 Hb_122028_010--Hb_028872_020 Hb_000914_190 Hb_000914_190 Hb_122028_010--Hb_000914_190 Hb_027654_010 Hb_027654_010 Hb_122028_010--Hb_027654_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0136523 0 0.0156972 0.00474521 0.0200536 0.00596396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0386744 0.259657

CAGE analysis