Hb_020250_020

Information

Type -
Description -
Location Contig20250: 6443-7183
Sequence    

Annotation

kegg
ID tcc:TCM_023017
description hypothetical protein
nr
ID XP_012453364.1
description PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061EV23
description Uncharacterized protein OS=Theobroma cacao GN=TCM_023017 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020250_020 0.0 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
2 Hb_003406_020 0.1146753855 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_185839_010 0.210172737 - - -
4 Hb_068031_010 0.2164148064 - - hypothetical protein VITISV_034229 [Vitis vinifera]
5 Hb_001570_010 0.2171498265 - - -
6 Hb_094917_010 0.2239673086 - - -
7 Hb_165100_010 0.2241265499 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_024248_010 0.2299891163 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
9 Hb_001401_030 0.231109165 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
10 Hb_003752_040 0.231177613 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
11 Hb_005676_020 0.234206202 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
12 Hb_000907_050 0.2416599713 - - -
13 Hb_000029_220 0.2432464561 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
14 Hb_009826_010 0.2438336483 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_003427_040 0.2454187431 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
16 Hb_001452_150 0.2476655259 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
17 Hb_062192_050 0.2489324491 - - -
18 Hb_027969_010 0.2527737653 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
19 Hb_003772_010 0.2530463337 - - polyprotein [Oryza australiensis]
20 Hb_085793_010 0.2531683357 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]

Gene co-expression network

sample Hb_020250_020 Hb_020250_020 Hb_003406_020 Hb_003406_020 Hb_020250_020--Hb_003406_020 Hb_185839_010 Hb_185839_010 Hb_020250_020--Hb_185839_010 Hb_068031_010 Hb_068031_010 Hb_020250_020--Hb_068031_010 Hb_001570_010 Hb_001570_010 Hb_020250_020--Hb_001570_010 Hb_094917_010 Hb_094917_010 Hb_020250_020--Hb_094917_010 Hb_165100_010 Hb_165100_010 Hb_020250_020--Hb_165100_010 Hb_003406_020--Hb_094917_010 Hb_003406_020--Hb_001570_010 Hb_004274_010 Hb_004274_010 Hb_003406_020--Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_003406_020--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_003406_020--Hb_003427_040 Hb_180367_010 Hb_180367_010 Hb_185839_010--Hb_180367_010 Hb_017225_010 Hb_017225_010 Hb_185839_010--Hb_017225_010 Hb_185839_010--Hb_165100_010 Hb_003739_040 Hb_003739_040 Hb_185839_010--Hb_003739_040 Hb_003567_020 Hb_003567_020 Hb_185839_010--Hb_003567_020 Hb_026532_010 Hb_026532_010 Hb_068031_010--Hb_026532_010 Hb_001662_020 Hb_001662_020 Hb_068031_010--Hb_001662_020 Hb_011616_060 Hb_011616_060 Hb_068031_010--Hb_011616_060 Hb_090778_010 Hb_090778_010 Hb_068031_010--Hb_090778_010 Hb_124540_020 Hb_124540_020 Hb_068031_010--Hb_124540_020 Hb_010783_010 Hb_010783_010 Hb_068031_010--Hb_010783_010 Hb_001570_010--Hb_094917_010 Hb_002447_100 Hb_002447_100 Hb_001570_010--Hb_002447_100 Hb_155423_010 Hb_155423_010 Hb_001570_010--Hb_155423_010 Hb_000567_270 Hb_000567_270 Hb_001570_010--Hb_000567_270 Hb_034197_020 Hb_034197_020 Hb_001570_010--Hb_034197_020 Hb_094917_010--Hb_002447_100 Hb_094917_010--Hb_155423_010 Hb_007590_030 Hb_007590_030 Hb_094917_010--Hb_007590_030 Hb_151870_010 Hb_151870_010 Hb_094917_010--Hb_151870_010 Hb_085793_010 Hb_085793_010 Hb_165100_010--Hb_085793_010 Hb_003205_040 Hb_003205_040 Hb_165100_010--Hb_003205_040 Hb_000043_040 Hb_000043_040 Hb_165100_010--Hb_000043_040 Hb_066206_010 Hb_066206_010 Hb_165100_010--Hb_066206_010 Hb_000574_290 Hb_000574_290 Hb_165100_010--Hb_000574_290 Hb_028248_010 Hb_028248_010 Hb_165100_010--Hb_028248_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.031143 0.0326006 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0238732 0.23421

CAGE analysis